Factsheet for Bra017646.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34380.1	Bra000214.1-P	AT2G41090.1	17360592
AT4G34380.1	Bra000214.1-P	AT2G41100.1	17360592
AT4G34380.1	Bra018296.1-P	AT3G51920.1	17360592
AT4G34380.1	Bra033467.1-P	AT3G51920.1	17360592
AT4G34380.1	Bra039723.1-P	AT4G14640.1	17360592
AT4G34380.1	Bra002368.1-P	AT5G21274.1	17360592
AT4G34380.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45305	Canola	cytosol	99.39	99.39
CDX72479	Canola	cytosol	96.32	96.32
Bra011525.1-P	Field mustard	cytosol	78.32	79.96
Bra034622.1-P	Field mustard	cytosol	79.55	79.55
AT4G34380.1	Thale cress	cytosol	80.16	79.19
Bra037545.1-P	Field mustard	cytosol	47.44	62.37
Bra015611.1-P	Field mustard	cytosol	42.54	57.3
VIT_03s0063g01790.t01	Wine grape	cytosol	51.94	57.08
Bra034310.1-P	Field mustard	nucleus	49.9	54.34
Bra007751.1-P	Field mustard	nucleus	49.28	53.56
Bra022372.1-P	Field mustard	cytosol	48.67	51.97
Bra014189.1-P	Field mustard	nucleus	48.88	51.18
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	48.67	51.07
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	48.26	50.75
Bra001728.1-P	Field mustard	nucleus	47.24	50.33
Bra036080.1-P	Field mustard	cytosol	43.76	46.42
Bra012903.1-P	Field mustard	cytosol	43.15	45.47
Bra032795.1-P	Field mustard	cytosol	24.34	38.51
Bra024637.1-P	Field mustard	plastid	31.08	37.25
Bra000611.1-P	Field mustard	nucleus	28.43	35.73
Bra033466.1-P	Field mustard	cytosol, plastid	28.43	32.78
Bra012504.1-P	Field mustard	cytosol, mitochondrion	27.61	32.3
Bra006883.1-P	Field mustard	plastid	27.81	32.08
Bra010967.1-P	Field mustard	cytosol, plastid	26.99	31.28
KRH24543	Soybean	cytosol, nucleus	46.22	29.93

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra017646	EnsemblPlants:Bra017646.1	EnsemblPlants:Bra017646.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4DMB4	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002541204	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT4G34380 (E=3e-220) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA03:+:29512980..29514449

Molecular Weight (calculated)

53488.7 Da

IEP (calculated)

9.279

GRAVY (calculated)

-0.400

Length

489 amino acids

Sequence
(BLAST)

001: MRNETGGTMV VDLQTDPYTI NHHPYDHCDN GHKPRPLLKA DHDGICPPED PIISDTNLTH QRFSSVSSSI MSIGPNSGEG SPCVMSPWAR VSPPWPAGFN
101: EENSLETIGL IGSIVREEGY IYSLAASGDL LYTGSGSKNV RVWKNLKDYA GFKSRSGLIK AIVICGDRVF TGHQDGKIRI WKVSTRKPGK HKRVGTLPTF
201: KSMVKTSVNP KNIMEARRNK NSKKKKHKDA VSSLSMDVEV GLLYSSSWDR TIKVWRISDS KCLESIQAHD DAINSVMFGF DDLVFTGSAD GTVKVWKREM
301: QVKGTKHELE QVLLKQENAV TALAVIPKSS MIYSGSSDGL VNYWERSKGI FIGGILKGHK SAVLCLTVAG NLLLSGAADK NICVWTRDPS DGSHQCVSVL
401: TGHMGPVKCL AVEEEQAYRT GVKASTVSEG DRKWIIYSGS LDKSVKVWRV SDRMGTWREV DEPSASSGRK SSLSPHGGSG AWSSCDLGK

Best Arabidopsis Sequence Match ( AT4G34380.1 )
(BLAST)

001: MRNETGGTMV VDLQTDPYNN IHSRHNLSYD LSEGPKPRPK FGNISKTDHD EIFPPDDPII INSNVTHQRF SSVSASTMSS GPASGEGSPC VMSPWARVSP
101: PWGADFNEDN VLETNGLIGS IVRKEGHIYS LAASGDLLYT GSDSKNIRVW KNLKEHAGFK SSSGLIKAIV IFGDRIFTGH QDGKIRIWKV SKRKPGKHKR
201: VGTLPTFKSM VKSSVNPKHF MEVRRNRNSV KTKHNDAVSS LSLDVELGLL YSSSWDTTIK VWRIADSKCL ESIHAHDDAI NSVMSGFDDL VFTGSADGTV
301: KVWKRELQGK GTKHTLAQVL LKQENAVTAL AVKSQSSIVY CGSSDGLVNY WERSKRSFTG GILKGHKSAV LCLGIAGNLL LSGSADKNIC VWRRDPSDKS
401: HQCLSVLTGH MGPVKCLAVE EERACHQGAK ASVAEGDRKW IIYSGSLDKS VKVWRVSERM ATWKEMDEPA ASSERKSSSS PHEGSGAWSS RNVEK

Arabidopsis Description

At4g34380 [Source:UniProtKB/TrEMBL;Acc:Q9SZ03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.