Factsheet for Bra011525.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34380.1	Bra000214.1-P	AT2G41090.1	17360592
AT4G34380.1	Bra000214.1-P	AT2G41100.1	17360592
AT4G34380.1	Bra018296.1-P	AT3G51920.1	17360592
AT4G34380.1	Bra033467.1-P	AT3G51920.1	17360592
AT4G34380.1	Bra039723.1-P	AT4G14640.1	17360592
AT4G34380.1	Bra002368.1-P	AT5G21274.1	17360592
AT4G34380.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75426	Canola	cytosol	97.08	97.08
Bra034622.1-P	Field mustard	cytosol	82.88	81.19
AT4G34380.1	Thale cress	cytosol	81.42	78.79
Bra017646.1-P	Field mustard	cytosol	79.96	78.32
Bra037545.1-P	Field mustard	cytosol	49.06	63.17
Bra015611.1-P	Field mustard	cytosol	43.84	57.85
VIT_03s0063g01790.t01	Wine grape	cytosol	53.03	57.08
Bra022372.1-P	Field mustard	cytosol	51.15	53.49
Bra034310.1-P	Field mustard	nucleus	49.9	53.23
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	51.36	52.79
Bra007751.1-P	Field mustard	nucleus	49.48	52.67
Bra014189.1-P	Field mustard	nucleus	50.94	52.25
Bra001728.1-P	Field mustard	nucleus	49.9	52.07
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	50.52	52.04
Bra036080.1-P	Field mustard	cytosol	45.09	46.85
Bra012903.1-P	Field mustard	cytosol	44.26	45.69
Bra024637.1-P	Field mustard	plastid	33.19	38.97
Bra032795.1-P	Field mustard	cytosol	25.05	38.84
Bra000611.1-P	Field mustard	nucleus	27.56	33.93
Bra033466.1-P	Field mustard	cytosol, plastid	28.6	32.31
Bra006883.1-P	Field mustard	plastid	28.6	32.31
Bra012504.1-P	Field mustard	cytosol, mitochondrion	28.18	32.3
Bra010967.1-P	Field mustard	cytosol, plastid	27.77	31.52
KRH24543	Soybean	cytosol, nucleus	46.35	29.4

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra011525	EnsemblPlants:Bra011525.1	EnsemblPlants:Bra011525.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4D4W8	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000254570E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

AT4G34380 (E=4e-224) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA01:-:1825877..1827316

Molecular Weight (calculated)

52518.7 Da

IEP (calculated)

9.761

GRAVY (calculated)

-0.315

Length

479 amino acids

Sequence
(BLAST)

001: MRSEAGGGTM VVDLQTDPYN NNHHRHEIIT DNVHKPRPKF GDILRADHDG IFPPVDPIII NTNLTNQRFS SVSTSTMSCG PASGDGSPCV MSPWARVSPP
101: WAADFNEDNV LETNGLVGSI VREEGHIYSL AASGDLLYTG SDSKNIRVWK NLKDYGGFKA SSGLIKAIVI FGDNRVFTGH QDGKIRIWKV SKRKPGKYKR
201: VGTLPTFKSL VKSSVNLKHY RGKNSVKTKH HDAVSSLSMD VEVGLLYSSS WDRTIKVWRV SDSKCLESIH AHEDAINSVM VGFDDLVFTG SADGTVKVWK
301: REMQVKTRHV LVQVLLKQES AVTALAVKLK SSMVYSGSSD GVVNYWQRSK KRVFVGGILK GHKSAVLCLA VAGNLLLSGS ADKNICVWRR DTSDGSHECL
401: SVLTGHMGPV KCLAVEEERA CRGKGGKVST VGEGDRKWIV YSGSLDKSVK VWRVSEKMAA WREIDEPEAG SCAWSSLGK

Best Arabidopsis Sequence Match ( AT4G34380.1 )
(BLAST)

001: MRNETGGTMV VDLQTDPYNN IHSRHNLSYD LSEGPKPRPK FGNISKTDHD EIFPPDDPII INSNVTHQRF SSVSASTMSS GPASGEGSPC VMSPWARVSP
101: PWGADFNEDN VLETNGLIGS IVRKEGHIYS LAASGDLLYT GSDSKNIRVW KNLKEHAGFK SSSGLIKAIV IFGDRIFTGH QDGKIRIWKV SKRKPGKHKR
201: VGTLPTFKSM VKSSVNPKHF MEVRRNRNSV KTKHNDAVSS LSLDVELGLL YSSSWDTTIK VWRIADSKCL ESIHAHDDAI NSVMSGFDDL VFTGSADGTV
301: KVWKRELQGK GTKHTLAQVL LKQENAVTAL AVKSQSSIVY CGSSDGLVNY WERSKRSFTG GILKGHKSAV LCLGIAGNLL LSGSADKNIC VWRRDPSDKS
401: HQCLSVLTGH MGPVKCLAVE EERACHQGAK ASVAEGDRKW IIYSGSLDKS VKVWRVSERM ATWKEMDEPA ASSERKSSSS PHEGSGAWSS RNVEK

Arabidopsis Description

At4g34380 [Source:UniProtKB/TrEMBL;Acc:Q9SZ03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.