Factsheet for Bra001728.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82320	Canola	nucleus	99.56	99.56
CDY69149	Canola	cytosol	96.73	96.73
Bra037545.1-P	Field mustard	cytosol	73.86	91.13
AT3G18950.1	Thale cress	cytosol, nucleus, plastid	87.58	84.99
Bra022372.1-P	Field mustard	cytosol	83.01	83.19
Bra014189.1-P	Field mustard	nucleus	73.42	72.16
Bra015611.1-P	Field mustard	cytosol	47.71	60.33
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	55.99	55.27
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	55.77	54.94
Bra034310.1-P	Field mustard	nucleus	50.33	51.45
Bra007751.1-P	Field mustard	nucleus	49.24	50.22
Bra011525.1-P	Field mustard	cytosol	52.07	49.9
Bra034622.1-P	Field mustard	cytosol	52.51	49.28
Bra017646.1-P	Field mustard	cytosol	50.33	47.24
Bra012903.1-P	Field mustard	cytosol	44.88	44.4
Bra036080.1-P	Field mustard	cytosol	44.23	44.03
Bra032795.1-P	Field mustard	cytosol	28.76	42.72
Bra024637.1-P	Field mustard	plastid	34.2	38.48
Bra000611.1-P	Field mustard	nucleus	30.28	35.73
Bra006883.1-P	Field mustard	plastid	32.24	34.91
Bra012504.1-P	Field mustard	cytosol, mitochondrion	31.15	34.21
Bra033466.1-P	Field mustard	cytosol, plastid	31.59	34.2
Bra010967.1-P	Field mustard	cytosol, plastid	31.15	33.89

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra001728	EnsemblPlants:Bra001728.1	EnsemblPlants:Bra001728.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4CBZ8	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00025404E3	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT3G18950 (E=5e-208) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA03:+:18091464..18092843

Molecular Weight (calculated)

50622.1 Da

IEP (calculated)

8.353

GRAVY (calculated)

-0.514

Length

459 amino acids

Sequence
(BLAST)

001: MVKANETSGS HHRRLTFADF LNSDPDAGKE EHNHGDHPSS SNNNNKDVNS HQQRQSNAST TSGDSSPNQV LSPWNQTYSP YHTDTTTTPT MSPSPWNQTY
101: SPYYKSPWIY QTQNIDDVSD NGLIGTIVRQ EGHVYSLAAS GNLLFTGSDS KNIRVWKDLK DFTGFKSTSG LVKTIVITGD NRIFTGHQDG KIRVWRGSKK
201: GYTRIGSLPT LKEFLTKSVN PKNYVEVRRR RNVLNIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG FDGLLFTGSA
301: DGALKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNLTA SVVYCGSSDG SVNFWEGQKY LSHGGTLRGH RTAVLCLAAA GSLVLSGGAD NNICVWRRNG
401: DGTHSYLSVL MDHVGPVKCL TAVEETEDED DGRWIVYSGS LDKSVKVWRV KETVSPVIG

Best Arabidopsis Sequence Match ( AT3G18950.1 )
(BLAST)

001: MVIATETTSS SHHRRLTFAS FLNSDPAADE EEQSHGVDDI INPSSSNKNI NKDVHHNYRQ SQSNASTTSG ESSPNQVLSP WNQTYSPYYT DTTNTPSMSP
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG

Arabidopsis Description

En/Spm-like transposon protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LJ71]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.