CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001728.1-P	Field mustard	nucleus	96.73	96.73
CDX82320	Canola	nucleus	96.3	96.3
CDX95477	Canola	cytosol	72.77	89.78
CDY18561	Canola	cytosol	86.71	86.15
CDX99296	Canola	cytosol	83.44	83.99
AT3G18950.1	Thale cress	cytosol, nucleus, plastid	86.49	83.93
CDX92289	Canola	cytosol	81.7	81.88
CDX84804	Canola	nucleus	45.53	80.38
CDY16499	Canola	nucleus	72.11	70.88
CDX77246	Canola	nucleus	71.68	70.15
CDY06729	Canola	cytosol	47.49	60.06
CDY70402	Canola	cytosol	46.62	59.12
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	55.34	54.62
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	55.12	54.29
CDX77053	Canola	cytosol	49.67	50.78
CDY48182	Canola	nucleus	49.67	50.78
CDX69050	Canola	cytosol	51.42	49.89
CDX75426	Canola	cytosol	51.63	49.48
CDY46256	Canola	cytosol	52.29	49.08
CDX76276	Canola	cytosol	51.85	48.67
CDX76704	Canola	cytosol	49.24	48.6
CDY11480	Canola	cytosol	49.24	48.6
CDX72479	Canola	cytosol	50.11	47.03
CDY45305	Canola	cytosol	49.89	46.83
CDY02088	Canola	cytosol, mitochondrion, nucleus	44.88	45.37
CDY23013	Canola	cytosol	44.88	45.27
CDY17780	Canola	cytosol	44.44	44.25
CDY52834	Canola	cytosol	44.23	43.94
CDY16242	Canola	plastid	33.99	38.14
CDY14665	Canola	plastid	33.33	37.59
CDX78047	Canola	plastid	32.03	35.17
CDY21432	Canola	cytosol, nucleus, plastid	29.41	34.79
CDX73675	Canola	cytosol, mitochondrion, plastid	32.03	34.67
CDX84954	Canola	plastid	31.81	34.6
CDY23176	Canola	cytosol, plastid	31.81	34.43
CDY70872	Canola	nucleus	28.76	34.29
CDY03879	Canola	cytosol, mitochondrion	31.15	34.21
CDY51591	Canola	cytosol, mitochondrion	30.72	33.73
CDY36134	Canola	plastid	30.72	33.41
CDY24427	Canola	plastid	30.5	33.18
CDY27587	Canola	plastid	31.37	33.1

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078JQR2	EnsemblPlants:CDY69149	ProteinID:CDY69149	ProteinID:CDY69149.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00083494001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE8B1E	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaCnng62130DBnaCnng62130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQR2]

Coordinates

chrLK038744:+:468..1847

Molecular Weight (calculated)

50559.2 Da

IEP (calculated)

9.290

GRAVY (calculated)

-0.498

Length

459 amino acids

Sequence
(BLAST)

001: MVKANETSGS HHRRLTFADF LNSDPDAGRE EHNHGGHPSS SNNNNKDVNS YQQRQSNAST TSGDSSPNQV LSPWNQTYSP YHTDTTTTPT MSPSPWNQTY
101: SPYYKSPWIY QTQNINDVSG NELIGTIVRQ EGHVYSLAAS GNLLFTGSDS KNIRVWKDLK DFTGFKSTSG LVKTIVITGD NRIFTGHQDG KIRVWRGSKK
201: GYTRIGSLPT LKEFLTKSVN PKNYVEVRRR RNVLKIRHYD AVSCLSLNEK LGLLYSGSWD KTLKVWSLSD SKCLESIQAH DDAINTVAAG FDGLLFTGSA
301: DGALKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNLTA SIVYCGSSDG SVNFWEGRKY LSHGGTLRGH RTAVLCLAAA GSLVLSGGAD NNICVWRRNG
401: EGTHSYLSVL MDHVGPVKCL TAVEETEEEG DGRWIVYSGS LDKSVKVWRV KETASPVIG

Best Arabidopsis Sequence Match ( AT3G18950.1 )
(BLAST)

001: MVIATETTSS SHHRRLTFAS FLNSDPAADE EEQSHGVDDI INPSSSNKNI NKDVHHNYRQ SQSNASTTSG ESSPNQVLSP WNQTYSPYYT DTTNTPSMSP
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG

Arabidopsis Description

En/Spm-like transposon protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LJ71]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.