CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34380.1	CDX73678	AT3G51920.1	17360592
AT4G34380.1	CDX95314	AT3G51920.1	17360592
AT4G34380.1	CDY23174	AT3G51920.1	17360592
AT4G34380.1	CDY06478	AT4G14640.1	17360592
AT4G34380.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017646.1-P	Field mustard	cytosol	99.39	99.39
CDX72479	Canola	cytosol	96.52	96.52
CDX69050	Canola	cytosol	77.91	80.55
CDY46256	Canola	cytosol	79.75	79.75
CDX75426	Canola	cytosol	77.91	79.54
AT4G34380.1	Thale cress	cytosol	80.16	79.19
CDX76276	Canola	cytosol	79.14	79.14
CDX95477	Canola	cytosol	47.44	62.37
VIT_03s0063g01790.t01	Wine grape	cytosol	52.35	57.53
CDY06729	Canola	cytosol	42.54	57.3
CDY70402	Canola	cytosol	42.13	56.91
CDY48182	Canola	nucleus	49.9	54.34
CDX77053	Canola	cytosol	49.69	54.12
CDX76704	Canola	cytosol	49.9	52.47
CDY11480	Canola	cytosol	49.9	52.47
CDX99296	Canola	cytosol	48.88	52.41
CDX92289	Canola	cytosol	49.08	52.4
CDY18561	Canola	cytosol	49.08	51.95
CDY16499	Canola	nucleus	49.08	51.39
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	48.67	51.07
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	48.26	50.75
CDX77246	Canola	nucleus	48.67	50.75
CDX82320	Canola	nucleus	47.24	50.33
CDY69149	Canola	cytosol	46.83	49.89
CDY17780	Canola	cytosol	44.38	47.07
CDY23013	Canola	cytosol	43.56	46.81
CDY02088	Canola	cytosol, mitochondrion, nucleus	43.35	46.7
CDY52834	Canola	cytosol	43.76	46.32
CDX84804	Canola	nucleus	22.09	41.54
CDY16242	Canola	plastid	31.29	37.41
CDY14665	Canola	plastid	30.88	37.1
CDY21432	Canola	cytosol, nucleus, plastid	28.02	35.31
CDY70872	Canola	nucleus	27.4	34.81
CDX84954	Canola	plastid	28.22	32.7
CDY23176	Canola	cytosol, plastid	28.22	32.55
CDY03879	Canola	cytosol, mitochondrion	27.81	32.54
CDX78047	Canola	plastid	27.61	32.3
CDY51591	Canola	cytosol, mitochondrion	27.61	32.3
CDX73675	Canola	cytosol, mitochondrion, plastid	27.81	32.08
CDY27587	Canola	plastid	28.02	31.49
CDY24427	Canola	plastid	26.99	31.28
CDY36134	Canola	plastid	26.79	31.04
KRH24543	Soybean	cytosol, nucleus	46.42	30.07

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078I360	EnsemblPlants:CDY45305	ProteinID:CDY45305	ProteinID:CDY45305.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00081756001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE768D	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaA03g52780DBnaA03g52780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I360]

Coordinates

chrLK032620:+:28418..29887

Molecular Weight (calculated)

53579.9 Da

IEP (calculated)

9.385

GRAVY (calculated)

-0.410

Length

489 amino acids

Sequence
(BLAST)

001: MRNETGGTMV VDLQTDPYTI NHHPYDHCDN GRKPRPLLKA DHDGICPPED PIISDTNLTH QRFSSVSSSI MSIGPNSGEG SPCVMSPWAR VSPPWPAGFN
101: EENSLETIGL IGSIVREEGY IYSLAASGDL LYTGSDSKNV RVWKNLKDYA GFKSRSGLIK AIVICGDRVF TGHQDGKIRI WKVSTRKPGK HKRVGTLPTF
201: KSMVKTSVNP KNIMEARRKK NSKKKKHKDA VSSLSMDVEV GLLYSSSWDR TIKVWRISDS KCLESIQAHD DAINSVMFGF DDLVFTGSAD GTVKVWKREM
301: QVKGTKHELE QVLLKQENAV TALAVIPKSS MIYSGSSDGL VNYWERSKGI FIGGILKGHK SAVLCLTVAG NLLLSGAADK NICVWTRDPS DGSHQCVSVL
401: TGHMGPVKCL AVEEEQAYRT GVKASTVSEG DRKWIIYSGS LDKSVKVWRV SDRMGTWREV DEPSASSGRK SSLSPHGGSG AWSSCDLGK

Best Arabidopsis Sequence Match ( AT4G34380.1 )
(BLAST)

001: MRNETGGTMV VDLQTDPYNN IHSRHNLSYD LSEGPKPRPK FGNISKTDHD EIFPPDDPII INSNVTHQRF SSVSASTMSS GPASGEGSPC VMSPWARVSP
101: PWGADFNEDN VLETNGLIGS IVRKEGHIYS LAASGDLLYT GSDSKNIRVW KNLKEHAGFK SSSGLIKAIV IFGDRIFTGH QDGKIRIWKV SKRKPGKHKR
201: VGTLPTFKSM VKSSVNPKHF MEVRRNRNSV KTKHNDAVSS LSLDVELGLL YSSSWDTTIK VWRIADSKCL ESIHAHDDAI NSVMSGFDDL VFTGSADGTV
301: KVWKRELQGK GTKHTLAQVL LKQENAVTAL AVKSQSSIVY CGSSDGLVNY WERSKRSFTG GILKGHKSAV LCLGIAGNLL LSGSADKNIC VWRRDPSDKS
401: HQCLSVLTGH MGPVKCLAVE EERACHQGAK ASVAEGDRKW IIYSGSLDKS VKVWRVSERM ATWKEMDEPA ASSERKSSSS PHEGSGAWSS RNVEK

Arabidopsis Description

At4g34380 [Source:UniProtKB/TrEMBL;Acc:Q9SZ03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.