CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11480	Canola	cytosol	99.14	99.14
Bra007751.1-P	Field mustard	nucleus	95.91	99.11
AT2G26490.1	Thale cress	cytosol	94.62	94.62
CDY48182	Canola	nucleus	87.96	91.09
CDX77053	Canola	cytosol	87.1	90.2
VIT_18s0001g11600.t01	Wine grape	nucleus	69.46	70.83
CDY06729	Canola	cytosol	50.97	65.29
PGSC0003DMT400016680	Potato	cytosol	62.37	65.02
CDY70402	Canola	cytosol	50.54	64.92
PGSC0003DMT400008621	Potato	mitochondrion	60.0	64.88
Solyc12g088980.1.1	Tomato	cytosol	56.34	64.53
Solyc07g025140.2.1	Tomato	cytosol	61.08	64.25
Solyc04g079700.2.1	Tomato	cytosol	61.29	64.19
PGSC0003DMT400039941	Potato	cytosol	55.91	63.88
KRH05757	Soybean	nucleus	62.58	62.45
KRH15278	Soybean	cytosol	48.82	62.36
CDX95477	Canola	cytosol	47.53	59.41
GSMUA_Achr3P30740_001	Banana	cytosol	41.08	54.57
TraesCS5B01G382700.1	Wheat	cytosol	55.27	54.11
TraesCS5D01G389000.1	Wheat	cytosol	55.27	54.11
TraesCS5A01G379200.1	Wheat	cytosol	55.48	54.09
HORVU5Hr1G093830.1	Barley	cytosol	55.48	53.86
Os03t0738700-01	Rice	plasma membrane	56.13	53.37
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	55.7	53.29
CDX69050	Canola	cytosol	51.83	50.95
CDY46256	Canola	cytosol	53.33	50.72
CDX75426	Canola	cytosol	52.04	50.52
CDX76276	Canola	cytosol	53.12	50.51
CDY18561	Canola	cytosol	49.89	50.22
CDY45305	Canola	cytosol	52.47	49.9
CDX72479	Canola	cytosol	52.47	49.9
CDX99296	Canola	cytosol	48.82	49.78
CDY02088	Canola	cytosol, mitochondrion, nucleus	48.6	49.78
CDX82320	Canola	nucleus	49.03	49.67
CDY23013	Canola	cytosol	48.6	49.67
CDX92289	Canola	cytosol	48.6	49.34
CDY69149	Canola	cytosol	48.6	49.24
CDY17780	Canola	cytosol	48.39	48.81
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	38.92	48.53
CDY52834	Canola	cytosol	48.17	48.48
CDX77246	Canola	nucleus	48.6	48.19
CDY16499	Canola	nucleus	48.39	48.18
GSMUA_Achr6P20880_001	Banana	cytosol	40.22	47.7
GSMUA_AchrUn_...	Banana	nucleus	37.85	44.22
CDX84804	Canola	nucleus	21.72	38.85
CDY14665	Canola	plastid	33.98	38.82
CDY16242	Canola	plastid	33.98	38.63
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	41.29	38.55
CDX78047	Canola	plastid	34.41	38.28
CDX73675	Canola	cytosol, mitochondrion, plastid	34.62	37.97
CDY23176	Canola	cytosol, plastid	33.76	37.03
CDY21432	Canola	cytosol, nucleus, plastid	30.75	36.86
CDY70872	Canola	nucleus	29.89	36.1
CDX84954	Canola	plastid	30.75	33.89
CDY27587	Canola	plastid	31.18	33.33
CDY03879	Canola	cytosol, mitochondrion	29.89	33.25
CDY51591	Canola	cytosol, mitochondrion	29.46	32.78
CDY36134	Canola	plastid	29.68	32.7
CDY24427	Canola	plastid	29.25	32.23
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	44.3	32.19

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX76704	ProteinID:CDX76704	ProteinID:CDX76704.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00127188001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF128	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDDA45	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC08g32900D

Coordinates

chrLK031808:-:630907..632304

Molecular Weight (calculated)

51311.8 Da

IEP (calculated)

8.978

GRAVY (calculated)

-0.414

Length

465 amino acids

Sequence
(BLAST)

001: MFAEADSIPR AKYGNMMHSD PNLTSTTTQQ TEEEYGVRNS SASAVGTGMY DRMSCEGSPM MMSPWNQANP FAQTQWSNVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKNRTA
201: LWIKHADAIS CLSLNDEQGL LYSASWDRTI KVWRISDSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKREQKG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGVLKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDANIH TCLSVLTGHT GPVKCLAVEA DREVSEHKDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQIGM MHQQQQQQVI SHSEPFMSEG SVSSSTGGAS SHRRH

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.