CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15278	Soybean	cytosol	66.09	84.62
VIT_18s0001g11600.t01	Wine grape	nucleus	64.16	65.57
Bra034310.1-P	Field mustard	nucleus	62.02	64.37
CDY48182	Canola	nucleus	62.02	64.37
CDX77053	Canola	cytosol	61.37	63.7
AT2G26490.1	Thale cress	cytosol	63.3	63.44
Bra007751.1-P	Field mustard	nucleus	61.16	63.33
CDX76704	Canola	cytosol	62.45	62.58
CDY11480	Canola	cytosol	62.23	62.37
PGSC0003DMT400008621	Potato	mitochondrion	57.3	62.09
PGSC0003DMT400039941	Potato	cytosol	53.86	61.67
Solyc12g088980.1.1	Tomato	cytosol	53.65	61.58
Solyc04g079700.2.1	Tomato	cytosol	57.94	60.81
PGSC0003DMT400016680	Potato	cytosol	57.51	60.09
Solyc07g025140.2.1	Tomato	cytosol	56.65	59.73
GSMUA_Achr3P30740_001	Banana	cytosol	42.06	56.0
KRH76925	Soybean	nucleus	53.43	54.13
KRH28540	Soybean	nucleus	53.0	53.93
TraesCS5D01G389000.1	Wheat	cytosol	54.94	53.89
TraesCS5B01G382700.1	Wheat	cytosol	54.94	53.89
TraesCS5A01G379200.1	Wheat	cytosol	54.94	53.67
HORVU5Hr1G093830.1	Barley	cytosol	54.94	53.44
Os03t0738700-01	Rice	plasma membrane	54.29	51.74
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	53.86	51.65
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	37.34	46.65
GSMUA_Achr6P20880_001	Banana	cytosol	39.06	46.43
GSMUA_AchrUn_...	Banana	nucleus	37.77	44.22
KRH57169	Soybean	cytosol, plasma membrane	28.76	39.3
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	40.56	37.95
KRH57017	Soybean	plastid	31.76	37.56
KRH39863	Soybean	cytosol, plastid	32.83	36.78
KRH74694	Soybean	nucleus	33.69	36.26
KRH03884	Soybean	cytosol	28.97	35.9
KRH03365	Soybean	nucleus, plastid	30.69	35.22
KRH63468	Soybean	plastid	31.55	35.17
KRH54449	Soybean	plastid	30.69	33.97
KRH69465	Soybean	nucleus	31.97	33.94
KRH62060	Soybean	cytosol	29.61	33.25
KRH43090	Soybean	plastid	30.47	32.95
KRH52729	Soybean	cytosol	32.19	32.82
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	41.85	30.47
KRH24543	Soybean	cytosol, nucleus	48.5	29.93
KRH23424	Soybean	plastid	25.75	27.21
KRH09907	Soybean	cytosol, plastid	13.95	24.9

Protein Annotations

EntrezGene:100805150	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02010781	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_17G246400
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1MXT0	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRH05757	ProteinID:KRH05757	ProteinID:KRH05757.1	PFAM:PF00400	PRINTS:PR00320
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF128	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000233E7C9	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr17:-:40209686..40212382

Molecular Weight (calculated)

51078.1 Da

IEP (calculated)

8.741

GRAVY (calculated)

-0.485

Length

466 amino acids

Sequence
(BLAST)

001: MFGETVPRPQ FMQSEPRMST TEALTDDEFT MQSSSTASPM SPYYYEQGRL SGEGSPMTMS PWNQTTNSPF SKPQWSQEQN SVPQNALVGS LVREEGHIYS
101: LAASGDLLYT GSDSKNIRVW KNLEEYSGFK SNSGLVKTII LSGQKIFTGH QDGKIRVWKV SPKNPSLHKR AGTLPTLKDI FKSSIKPSNY VEVRRHKTAL
201: WIRHSDAVSC LSLSADKTYL YSASWDRTIK VWRISDSKCL ESIHAHDDAV NAVVCGDGGV MFSGSADGTV KVWRREPRGK GLKHAPVKTL LKQECAVTAL
301: AMDAAGGSMV YCGASDGLVN FWESDKNYAH GGVLKGHKLA VLCLTAAGTL VFSGSADKTI CVWKREGLIH TCMSVLTGHD GPVKCLAVEE DRKAAAKGDR
401: ERLWSLYSGS LDKSVKIWSV SESMNNDNNN NNSNDQVRHH RMASDADSLP SVSDSSFSSG RTNGRN

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.