CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03365	Soybean	nucleus, plastid	87.82	85.22
KRH54449	Soybean	plastid	68.53	64.13
KRH63468	Soybean	plastid	67.77	63.88
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	63.71	61.82
AT5G50120.1	Thale cress	nucleus	54.57	55.41
CDY21432	Canola	cytosol, nucleus, plastid	54.57	55.41
Bra000611.1-P	Field mustard	nucleus	54.57	55.27
PGSC0003DMT400062862	Potato	cytosol	54.82	54.82
KRH74694	Soybean	nucleus	58.63	53.35
CDY70872	Canola	nucleus	52.03	53.25
KRH69465	Soybean	nucleus	57.61	51.71
GSMUA_Achr6P36100_001	Banana	cytosol	48.48	48.6
Solyc03g113850.1.1	Tomato	cytosol, plastid	56.6	47.05
Os02t0740900-01	Rice	plastid	47.21	45.7
GSMUA_Achr7P19910_001	Banana	cytosol	50.51	45.23
TraesCS7B01G100800.1	Wheat	cytosol	43.65	44.56
HORVU7Hr1G039810.1	Barley	plastid	43.4	44.53
Zm00001d017994_P001	Maize	cytosol	39.59	43.82
KRH43090	Soybean	plastid	47.72	43.62
KRH57169	Soybean	cytosol, plasma membrane	37.56	43.4
EES07284	Sorghum	cytosol	46.95	42.43
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	42.13	41.6
KRH03884	Soybean	cytosol	37.56	39.36
TraesCS7D01G196700.1	Wheat	cytosol	44.16	35.01
TraesCS7A01G195200.1	Wheat	cytosol	43.65	34.54
KRH39863	Soybean	cytosol, plastid	34.01	32.21
KRH15278	Soybean	cytosol	29.44	31.87
KRH05757	Soybean	nucleus	37.56	31.76
KRH28540	Soybean	nucleus	34.77	29.91
KRH76925	Soybean	nucleus	34.52	29.57
KRH52729	Soybean	cytosol	32.23	27.79
KRH62060	Soybean	cytosol	28.68	27.23
KRH23424	Soybean	plastid	29.44	26.3
KRH09907	Soybean	cytosol, plastid	14.72	22.22
KRH24543	Soybean	cytosol, nucleus	34.26	17.88

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02002805	EnsemblPlantsGene:GLYMA_05G033700	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	UniProt:I1JZW7	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH57017
ProteinID:KRH57017	ProteinID:KRH57017.1	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF278	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002339E21	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:2928085..2929424

Molecular Weight (calculated)

43681.9 Da

IEP (calculated)

9.456

GRAVY (calculated)

-0.274

Length

394 amino acids

Sequence
(BLAST)

001: MEHSASFNNN SLSSQRSLAS VPSLNSHSHL FIPSTTSHSC LTTLKPHTSS SVYISCLTLA GNLLYTGSSD REIRSWNHTH FIQKPTTTNN NVVIAGKGAV
101: KSIVVHSDKL FTAHQDNKIR VWRVTNLEHD QNQKYTRVAT LPTLGDRLTK LLLPKNQVRI RRHKKCTWVH HVDTVSSLAL SKDGTFLYSV SWDRTIKVWR
201: TKDFACLESV RDAHDDAINA VAVSYDGYVY TGSADKRIRV WKKLEGEKKH SLVDTLEKHN SGINALALSA DGSVLYSGAC DRSILVSEKG KNGKLLVVGA
301: LRGHTRSILC LAVVSDLVCS GSEDKTVRIW RGVQKEYSCL AVLEGHRSPI KSLTAAVDRS EQDPNSEEPS FLVYSASLDC DVKVWQVFVP LLST

Best Arabidopsis Sequence Match ( AT5G50120.1 )
(BLAST)

001: MIQFQESEEE PDFSQEDHLT SSSQPLHQCI ATLVCHTASY ISSLTLAGKR LYTGSNDGVV RLWNANTLET LAEASSNGDV ITGERGGGGA VKSLVILADK
101: LFTAHQDHKI RVWKINDVVE EDVGGKKYMH LATMPTISDR FAKCLMPKNQ VEIRRHKKAS WVHHVDAVSG LALSRDGTLL YSVSWDRTLK IWRTTDFKCL
201: ESFTNAHDDA INAVALSENG DIYTGSSDQR IKVWRKNINE ENVKKKRKHS LVAILSEHNS GINALALSGT NGSLLHSGGS DGSILVWERD DGGDIVVVGM
301: LRGHTESVLC LAVVSDILCS GSADKTVRLW KCSAKDYSCL AMLEGHLGPV KCLTGAFRDS RKADEASYHI YSGGLDSQVK VWQVLVPA

Arabidopsis Description

Similarity to GTP-binding regulatory protein and WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9FG99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.