CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70872	Canola	nucleus	90.46	91.17
AT5G50120.1	Thale cress	nucleus	82.73	82.73
KRH57017	Soybean	plastid	55.41	54.57
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	56.96	54.43
PGSC0003DMT400062862	Potato	cytosol	53.61	52.79
KRH54449	Soybean	plastid	56.44	52.02
KRH63468	Soybean	plastid	55.67	51.67
KRH03365	Soybean	nucleus, plastid	53.09	50.74
CDY14665	Canola	plastid	51.29	48.89
CDY16242	Canola	plastid	50.77	48.17
GSMUA_Achr6P36100_001	Banana	cytosol	44.85	44.27
Solyc03g113850.1.1	Tomato	cytosol, plastid	53.09	43.46
HORVU7Hr1G039810.1	Barley	plastid	40.98	41.41
Zm00001d017994_P001	Maize	cytosol	37.63	41.01
Os02t0740900-01	Rice	plastid	42.53	40.54
TraesCS7B01G100800.1	Wheat	cytosol	40.21	40.41
GSMUA_Achr7P19910_001	Banana	cytosol	45.36	40.0
EES07284	Sorghum	cytosol	43.56	38.76
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	39.69	38.6
CDY03879	Canola	cytosol, mitochondrion	40.98	38.04
CDY51591	Canola	cytosol, mitochondrion	40.72	37.8
CDX84954	Canola	plastid	40.98	37.68
CDY70402	Canola	cytosol	34.54	37.02
CDY36134	Canola	plastid	40.21	36.97
CDY24427	Canola	plastid	40.21	36.97
CDY06729	Canola	cytosol	34.54	36.91
CDY27587	Canola	plastid	40.72	36.32
CDX95477	Canola	cytosol	34.28	35.75
TraesCS7D01G196700.1	Wheat	cytosol	42.27	33.0
CDX78047	Canola	plastid	35.05	32.54
TraesCS7A01G195200.1	Wheat	cytosol	41.75	32.53
CDY23176	Canola	cytosol, plastid	35.05	32.08
CDX73675	Canola	cytosol, mitochondrion, plastid	35.05	32.08
CDY48182	Canola	nucleus	36.6	31.63
CDX77053	Canola	cytosol	36.6	31.63
CDX76704	Canola	cytosol	36.86	30.75
CDY11480	Canola	cytosol	36.86	30.75
CDY02088	Canola	cytosol, mitochondrion, nucleus	35.05	29.96
CDY23013	Canola	cytosol	35.05	29.89
CDX99296	Canola	cytosol	35.05	29.82
CDX92289	Canola	cytosol	35.05	29.69
CDX82320	Canola	nucleus	35.05	29.63
CDY69149	Canola	cytosol	34.79	29.41
CDY17780	Canola	cytosol	34.79	29.28
CDY18561	Canola	cytosol	34.79	29.22
CDY16499	Canola	nucleus	35.05	29.12
CDY52834	Canola	cytosol	34.28	28.79
CDX77246	Canola	nucleus	34.28	28.36
CDX72479	Canola	cytosol	35.31	28.02
CDY45305	Canola	cytosol	35.31	28.02
CDX69050	Canola	cytosol	33.76	27.7
CDX76276	Canola	cytosol	34.79	27.61
CDY46256	Canola	cytosol	34.79	27.61
CDX75426	Canola	cytosol	34.02	27.56
CDX84804	Canola	nucleus	12.11	18.08

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078G8U7	EnsemblPlants:CDY21432	ProteinID:CDY21432	ProteinID:CDY21432.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00015824001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF322	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EEC3E8
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

BnaC03g27650DBnaC03g27650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8U7]

Coordinates

chrLK032121:+:8131..9297

Molecular Weight (calculated)

42559.3 Da

IEP (calculated)

6.893

GRAVY (calculated)

-0.299

Length

388 amino acids

Sequence
(BLAST)

001: MIRCHGTQEE GDWSHEDHQI SISQALHQCI ATLVGHTSSY ISSLTLAGKR LYTGSSDGAV RLWNASTLET LAEASSNGDV ITGERGDGGA VKSLVILADK
101: LFTAHQDQKI RVWKIKDVVE EAEASNKKYM HLATMPTMSD RLAKCLMPNN QVQIRRHKKA SWVHHVDAVS GLALSRDGAL LYSVSWDRTL KIWRTTDFKC
201: LESITNAHDD AINAVELSEN GDIYTGSSDR KIKVWRKNLD EEKKKKKKHY LVATLSDHDS GINALALSSY NLLYSGGSDG SILVWERDHE GGHVAVAGVL
301: RGHTESVLCL AVVSDIVCSG SADKTVRLWK CSSEDYSCLA VLEGHRGPVK CLTGAIRDSG TQSEASYHIY SGGLDSQVKV WEILEPAL

Best Arabidopsis Sequence Match ( AT5G50120.1 )
(BLAST)

001: MIQFQESEEE PDFSQEDHLT SSSQPLHQCI ATLVCHTASY ISSLTLAGKR LYTGSNDGVV RLWNANTLET LAEASSNGDV ITGERGGGGA VKSLVILADK
101: LFTAHQDHKI RVWKINDVVE EDVGGKKYMH LATMPTISDR FAKCLMPKNQ VEIRRHKKAS WVHHVDAVSG LALSRDGTLL YSVSWDRTLK IWRTTDFKCL
201: ESFTNAHDDA INAVALSENG DIYTGSSDQR IKVWRKNINE ENVKKKRKHS LVAILSEHNS GINALALSGT NGSLLHSGGS DGSILVWERD DGGDIVVVGM
301: LRGHTESVLC LAVVSDILCS GSADKTVRLW KCSAKDYSCL AMLEGHLGPV KCLTGAFRDS RKADEASYHI YSGGLDSQVK VWQVLVPA

Arabidopsis Description

Similarity to GTP-binding regulatory protein and WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9FG99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.