Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001728.1-P | Field mustard | nucleus | 99.56 | 99.56 |
| CDY69149 | Canola | cytosol | 96.3 | 96.3 |
| CDX95477 | Canola | cytosol | 73.2 | 90.32 |
| CDY18561 | Canola | cytosol | 87.15 | 86.58 |
| CDX99296 | Canola | cytosol | 84.31 | 84.87 |
| AT3G18950.1 | Thale cress | cytosol, nucleus, plastid | 87.15 | 84.57 |
| CDX92289 | Canola | cytosol | 82.57 | 82.75 |
| CDX84804 | Canola | nucleus | 45.97 | 81.15 |
| CDY16499 | Canola | nucleus | 73.42 | 72.16 |
| CDX77246 | Canola | nucleus | 72.98 | 71.43 |
| CDY06729 | Canola | cytosol | 47.28 | 59.78 |
| CDY70402 | Canola | cytosol | 46.62 | 59.12 |
| Solyc01g109120.2.1 | Tomato | cytosol, mitochondrion | 55.99 | 55.27 |
| PGSC0003DMT400066737 | Potato | cytosol, mitochondrion | 55.77 | 54.94 |
| CDX77053 | Canola | cytosol | 50.76 | 51.89 |
| CDY48182 | Canola | nucleus | 50.54 | 51.67 |
| CDX69050 | Canola | cytosol | 52.07 | 50.53 |
| CDX75426 | Canola | cytosol | 52.29 | 50.1 |
| CDY46256 | Canola | cytosol | 52.94 | 49.69 |
| CDX76276 | Canola | cytosol | 52.51 | 49.28 |
| CDY11480 | Canola | cytosol | 49.67 | 49.03 |
| CDX76704 | Canola | cytosol | 49.67 | 49.03 |
| CDX72479 | Canola | cytosol | 50.98 | 47.85 |
| CDY45305 | Canola | cytosol | 50.33 | 47.24 |
| CDY02088 | Canola | cytosol, mitochondrion, nucleus | 44.88 | 45.37 |
| CDY23013 | Canola | cytosol | 44.88 | 45.27 |
| CDY17780 | Canola | cytosol | 44.23 | 44.03 |
| CDY52834 | Canola | cytosol | 44.01 | 43.72 |
| CDY16242 | Canola | plastid | 34.42 | 38.63 |
| CDY14665 | Canola | plastid | 33.77 | 38.08 |
| CDX78047 | Canola | plastid | 32.24 | 35.41 |
| CDX84954 | Canola | plastid | 32.46 | 35.31 |
| CDY21432 | Canola | cytosol, nucleus, plastid | 29.63 | 35.05 |
| CDX73675 | Canola | cytosol, mitochondrion, plastid | 32.24 | 34.91 |
| CDY03879 | Canola | cytosol, mitochondrion | 31.59 | 34.69 |
| CDY23176 | Canola | cytosol, plastid | 32.03 | 34.67 |
| CDY70872 | Canola | nucleus | 28.98 | 34.55 |
| CDY51591 | Canola | cytosol, mitochondrion | 31.15 | 34.21 |
| CDY36134 | Canola | plastid | 31.37 | 34.12 |
| CDY24427 | Canola | plastid | 31.15 | 33.89 |
| CDY27587 | Canola | plastid | 32.03 | 33.79 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EnsemblPlants:CDX82320 | ProteinID:CDX82320 | ProteinID:CDX82320.1 | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00137436001 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22844 |
| PANTHER:PTHR22844:SF145 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EE3D1F | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
BnaA03g35010D
Coordinates
chrLK031828:-:575905..577284
Molecular Weight (calculated)
50625.1 Da
IEP (calculated)
8.353
GRAVY (calculated)
-0.513
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKANETSGS HHRRLTFADF LNSDPDAGKE EHNHGDHPSS SSNNNKDVNS HQQRQSNAST TSGDSSPNQV LSPWNQTYSP YHTDTTTTPT MSPSPWNQTY
101: SPYYKSPWIY QTQNIDDVSD NGLIGTIVRQ EGHVYSLAAS GNLLFTGSDS KNIRVWKDLK DFTGFKSTSG LVKTIVITGD NRIFTGHQDG KIRVWRGSKK
201: GYTRIGSLPT LKEFLTKSVN PKNYVEVRRR RNVLNIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVATG FDGLLFTGSA
301: DGALKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNLTA SVVYCGSSDG SVNFWEGQKY LSHGGTLRGH RTAVLCLAAA GSLVLSGGAD NNICVWRRNG
401: DGTHSYLSVL MDHVGPVKCL TAVEETEDED DGRWIVYSGS LDKSVKVWRV KETVSPVIG
101: SPYYKSPWIY QTQNIDDVSD NGLIGTIVRQ EGHVYSLAAS GNLLFTGSDS KNIRVWKDLK DFTGFKSTSG LVKTIVITGD NRIFTGHQDG KIRVWRGSKK
201: GYTRIGSLPT LKEFLTKSVN PKNYVEVRRR RNVLNIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVATG FDGLLFTGSA
301: DGALKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNLTA SVVYCGSSDG SVNFWEGQKY LSHGGTLRGH RTAVLCLAAA GSLVLSGGAD NNICVWRRNG
401: DGTHSYLSVL MDHVGPVKCL TAVEETEDED DGRWIVYSGS LDKSVKVWRV KETVSPVIG
001: MVIATETTSS SHHRRLTFAS FLNSDPAADE EEQSHGVDDI INPSSSNKNI NKDVHHNYRQ SQSNASTTSG ESSPNQVLSP WNQTYSPYYT DTTNTPSMSP
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG
Arabidopsis Description
En/Spm-like transposon protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LJ71]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.