CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92289	Canola	cytosol	95.18	94.76
CDX95477	Canola	cytosol	73.68	90.32
CDY18561	Canola	cytosol	89.69	88.53
CDX82320	Canola	nucleus	84.87	84.31
CDY69149	Canola	cytosol	83.99	83.44
AT3G18950.1	Thale cress	cytosol, nucleus, plastid	86.4	83.3
CDX84804	Canola	nucleus	47.37	83.08
CDY16499	Canola	nucleus	73.46	71.73
CDX77246	Canola	nucleus	73.46	71.43
CDY06729	Canola	cytosol	47.15	59.23
CDY70402	Canola	cytosol	46.27	58.29
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	55.26	54.19
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	55.04	53.86
CDX69050	Canola	cytosol	53.73	51.8
CDX77053	Canola	cytosol	50.88	51.67
CDY48182	Canola	nucleus	50.66	51.45
CDX75426	Canola	cytosol	53.29	50.73
CDY46256	Canola	cytosol	53.07	49.49
CDX76276	Canola	cytosol	52.63	49.08
CDY45305	Canola	cytosol	52.41	48.88
CDY11480	Canola	cytosol	49.78	48.82
CDX76704	Canola	cytosol	49.78	48.82
CDX72479	Canola	cytosol	52.19	48.67
CDY02088	Canola	cytosol, mitochondrion, nucleus	45.83	46.04
CDY23013	Canola	cytosol	45.83	45.93
CDY17780	Canola	cytosol	45.39	44.9
CDY52834	Canola	cytosol	44.96	44.37
CDY16242	Canola	plastid	34.65	38.63
CDY14665	Canola	plastid	33.99	38.08
CDX78047	Canola	plastid	33.33	36.36
CDY23176	Canola	cytosol, plastid	33.55	36.08
CDX73675	Canola	cytosol, mitochondrion, plastid	33.55	36.08
CDY21432	Canola	cytosol, nucleus, plastid	29.82	35.05
CDY70872	Canola	nucleus	29.17	34.55
CDX84954	Canola	plastid	31.8	34.36
CDY51591	Canola	cytosol, mitochondrion	30.92	33.73
CDY03879	Canola	cytosol, mitochondrion	30.92	33.73
CDY24427	Canola	plastid	30.92	33.41
CDY36134	Canola	plastid	30.7	33.18
CDY27587	Canola	plastid	31.36	32.87

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX99296	ProteinID:CDX99296	ProteinID:CDX99296.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00107568001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EED398	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC05g34110D

Coordinates

chrLK031909:-:960624..961994

Molecular Weight (calculated)

50042.8 Da

IEP (calculated)

8.825

GRAVY (calculated)

-0.418

Length

456 amino acids

Sequence
(BLAST)

001: MVIAAETNGT HHRRPTFAAF LNTDEEEQSH GADVIDPTST SVNNQQRQSN ASNTSGDSSP NQVPSPWNQT YSPYYTDTTT TPTMSPSPWN QTYSPYYKSP
101: WIYQTTPNVD DDSANGLIGT IVRQEGHVYS LAASGDLLFT GSDSKNIRVW KDLKDFAGFK STSGSVKAIV ITGNNRIFTG HQDGKIRIWR GSKKRTGVYS
201: RIGSLPSTKQ FLTKSVNPKN YVEVRRHKNV LKIRHYDAVS CLSLNEELGL LYSGSWDKTL KVWRLSDSKC LESIQAHDDA INTVAAGFDD LLFTGSADGT
301: LKVWKRELQG KRTKHFLVNV LMKQENAVTA LAVNLTACVV YCGTSDGSVN FWEGKNNLSH GGILRGHRMA VLCLAAAGSL VLSGGADKNI CVWRRNGDGS
401: HSCLSVLMDH VGPVKCLTAV EEAEKDSNGR WIVYSGSLDK SVKVWRVTET APPVIG

Best Arabidopsis Sequence Match ( AT3G18950.1 )
(BLAST)

001: MVIATETTSS SHHRRLTFAS FLNSDPAADE EEQSHGVDDI INPSSSNKNI NKDVHHNYRQ SQSNASTTSG ESSPNQVLSP WNQTYSPYYT DTTNTPSMSP
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG

Arabidopsis Description

En/Spm-like transposon protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LJ71]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.