Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY48182 | Canola | nucleus | 98.0 | 98.0 |
AT2G26490.1 | Thale cress | cytosol | 91.31 | 88.17 |
CDX76704 | Canola | cytosol | 90.2 | 87.1 |
CDY11480 | Canola | cytosol | 89.98 | 86.88 |
VIT_18s0001g11600.t01 | Wine grape | nucleus | 69.93 | 68.86 |
CDY06729 | Canola | cytosol | 53.01 | 65.56 |
PGSC0003DMT400008621 | Potato | mitochondrion | 61.92 | 64.65 |
CDY70402 | Canola | cytosol | 52.12 | 64.64 |
Solyc04g079700.2.1 | Tomato | cytosol | 63.47 | 64.19 |
Solyc12g088980.1.1 | Tomato | cytosol | 57.68 | 63.79 |
PGSC0003DMT400039941 | Potato | cytosol | 57.68 | 63.64 |
PGSC0003DMT400016680 | Potato | cytosol | 62.81 | 63.23 |
Solyc07g025140.2.1 | Tomato | cytosol | 61.69 | 62.67 |
KRH05757 | Soybean | nucleus | 63.7 | 61.37 |
KRH15278 | Soybean | cytosol | 49.67 | 61.26 |
CDX95477 | Canola | cytosol | 50.56 | 61.02 |
GSMUA_Achr3P30740_001 | Banana | cytosol | 42.98 | 55.14 |
TraesCS5D01G389000.1 | Wheat | cytosol | 57.46 | 54.32 |
TraesCS5B01G382700.1 | Wheat | cytosol | 57.46 | 54.32 |
TraesCS5A01G379200.1 | Wheat | cytosol | 57.68 | 54.3 |
HORVU5Hr1G093830.1 | Barley | cytosol | 57.91 | 54.28 |
Os03t0738700-01 | Rice | plasma membrane | 58.35 | 53.58 |
EER93490 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 57.91 | 53.5 |
CDY18561 | Canola | cytosol | 52.78 | 51.3 |
CDX99296 | Canola | cytosol | 51.67 | 50.88 |
CDX82320 | Canola | nucleus | 51.89 | 50.76 |
CDX92289 | Canola | cytosol | 51.22 | 50.22 |
CDX69050 | Canola | cytosol | 52.78 | 50.11 |
CDY46256 | Canola | cytosol | 54.57 | 50.1 |
CDX72479 | Canola | cytosol | 54.34 | 49.9 |
CDY45305 | Canola | cytosol | 54.12 | 49.69 |
CDX75426 | Canola | cytosol | 53.01 | 49.69 |
CDY69149 | Canola | cytosol | 50.78 | 49.67 |
CDY02088 | Canola | cytosol, mitochondrion, nucleus | 50.11 | 49.56 |
CDX76276 | Canola | cytosol | 53.9 | 49.49 |
CDY23013 | Canola | cytosol | 50.11 | 49.45 |
CDX77246 | Canola | nucleus | 51.22 | 49.04 |
CDY16499 | Canola | nucleus | 51.0 | 49.04 |
GSMUA_Achr4P10690_001 | Banana | cytosol, endoplasmic reticulum, plastid | 40.31 | 48.53 |
CDY17780 | Canola | cytosol | 49.67 | 48.37 |
CDY52834 | Canola | cytosol | 49.44 | 48.05 |
GSMUA_Achr6P20880_001 | Banana | cytosol | 40.09 | 45.92 |
GSMUA_AchrUn_... | Banana | nucleus | 38.31 | 43.22 |
CDX84804 | Canola | nucleus | 22.27 | 38.46 |
GSMUA_Achr4P07470_001 | Banana | endoplasmic reticulum, plasma membrane | 42.54 | 38.35 |
CDY14665 | Canola | plastid | 34.52 | 38.08 |
CDY16242 | Canola | plastid | 34.52 | 37.9 |
CDX78047 | Canola | plastid | 35.19 | 37.8 |
CDX73675 | Canola | cytosol, mitochondrion, plastid | 35.41 | 37.5 |
CDY21432 | Canola | cytosol, nucleus, plastid | 31.63 | 36.6 |
CDY23176 | Canola | cytosol, plastid | 34.52 | 36.56 |
CDY70872 | Canola | nucleus | 30.51 | 35.58 |
CDX84954 | Canola | plastid | 31.18 | 33.18 |
CDY03879 | Canola | cytosol, mitochondrion | 30.51 | 32.78 |
GSMUA_Achr4P03080_001 | Banana | mitochondrion, nucleus, peroxisome, plasma membrane | 46.1 | 32.34 |
CDY51591 | Canola | cytosol, mitochondrion | 30.07 | 32.3 |
CDY27587 | Canola | plastid | 31.18 | 32.18 |
CDY36134 | Canola | plastid | 30.07 | 31.99 |
CDY24427 | Canola | plastid | 29.62 | 31.52 |
Protein Annotations
Gene3D:2.130.10.10 | MapMan:35.1 | EnsemblPlants:CDX77053 | ProteinID:CDX77053 | ProteinID:CDX77053.1 | InterPro:G-protein_beta_WD-40_rep |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00127625001 | InterPro:IPR001680 | InterPro:IPR015943 |
InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22844 |
PANTHER:PTHR22844:SF128 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EE59F6 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
BnaC04g38480D
Coordinates
chrLK031809:+:732886..734235
Molecular Weight (calculated)
49263.2 Da
IEP (calculated)
7.802
GRAVY (calculated)
-0.375
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MMHPDPNLSS AMTDQTEDEY GLRNSSASAV GTGMYGRMSC EGSPVMMSPW NQASPFTQTE WSNVDENLPQ NGLIGSLVRE EGHIYSLAAT KDLLYTGSDS
101: KNIRVWKNLK EFSAFKCNSG LVKAIVISGE KIFTGHQDGK IRVWKVSPKN QSSHKRSGTL PTLKDIFKAS LKPSNYVEVK KNRTALWIKH ADAVSCLSLN
201: EEQGLLYSAS WDRTIKVWRI SDSKCLESIP AHDDAVNSVV STTEAIVFSG SADGTVKAWK REQQGKHTKH TLMQTLTKQE TAITALAVNK NGTAVYFGSS
301: DGLVNFWERD QKQLNYGGVL EGHKLAVLCL EVAGSLVFSG SADKTICVWK RDGNIHTCLS VLTGHTGPVK CLAVEENLEV SERKDHKWIV YSGSLDKSVK
401: VWGVSESFID MNNMCTMQQQ QHVISHSEVV MSDGSFSSSA GGASSHQRG
101: KNIRVWKNLK EFSAFKCNSG LVKAIVISGE KIFTGHQDGK IRVWKVSPKN QSSHKRSGTL PTLKDIFKAS LKPSNYVEVK KNRTALWIKH ADAVSCLSLN
201: EEQGLLYSAS WDRTIKVWRI SDSKCLESIP AHDDAVNSVV STTEAIVFSG SADGTVKAWK REQQGKHTKH TLMQTLTKQE TAITALAVNK NGTAVYFGSS
301: DGLVNFWERD QKQLNYGGVL EGHKLAVLCL EVAGSLVFSG SADKTICVWK RDGNIHTCLS VLTGHTGPVK CLAVEENLEV SERKDHKWIV YSGSLDKSVK
401: VWGVSESFID MNNMCTMQQQ QHVISHSEVV MSDGSFSSSA GGASSHQRG
001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH
Arabidopsis Description
JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.