Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48182 Canola nucleus 98.0 98.0
AT2G26490.1 Thale cress cytosol 91.31 88.17
CDX76704 Canola cytosol 90.2 87.1
CDY11480 Canola cytosol 89.98 86.88
VIT_18s0001g11600.t01 Wine grape nucleus 69.93 68.86
CDY06729 Canola cytosol 53.01 65.56
PGSC0003DMT400008621 Potato mitochondrion 61.92 64.65
CDY70402 Canola cytosol 52.12 64.64
Solyc04g079700.2.1 Tomato cytosol 63.47 64.19
Solyc12g088980.1.1 Tomato cytosol 57.68 63.79
PGSC0003DMT400039941 Potato cytosol 57.68 63.64
PGSC0003DMT400016680 Potato cytosol 62.81 63.23
Solyc07g025140.2.1 Tomato cytosol 61.69 62.67
KRH05757 Soybean nucleus 63.7 61.37
KRH15278 Soybean cytosol 49.67 61.26
CDX95477 Canola cytosol 50.56 61.02
GSMUA_Achr3P30740_001 Banana cytosol 42.98 55.14
TraesCS5D01G389000.1 Wheat cytosol 57.46 54.32
TraesCS5B01G382700.1 Wheat cytosol 57.46 54.32
TraesCS5A01G379200.1 Wheat cytosol 57.68 54.3
HORVU5Hr1G093830.1 Barley cytosol 57.91 54.28
Os03t0738700-01 Rice plasma membrane 58.35 53.58
EER93490 Sorghum cytosol, endoplasmic reticulum, nucleus 57.91 53.5
CDY18561 Canola cytosol 52.78 51.3
CDX99296 Canola cytosol 51.67 50.88
CDX82320 Canola nucleus 51.89 50.76
CDX92289 Canola cytosol 51.22 50.22
CDX69050 Canola cytosol 52.78 50.11
CDY46256 Canola cytosol 54.57 50.1
CDX72479 Canola cytosol 54.34 49.9
CDY45305 Canola cytosol 54.12 49.69
CDX75426 Canola cytosol 53.01 49.69
CDY69149 Canola cytosol 50.78 49.67
CDY02088 Canola cytosol, mitochondrion, nucleus 50.11 49.56
CDX76276 Canola cytosol 53.9 49.49
CDY23013 Canola cytosol 50.11 49.45
CDX77246 Canola nucleus 51.22 49.04
CDY16499 Canola nucleus 51.0 49.04
GSMUA_Achr4P10690_001 Banana cytosol, endoplasmic reticulum, plastid 40.31 48.53
CDY17780 Canola cytosol 49.67 48.37
CDY52834 Canola cytosol 49.44 48.05
GSMUA_Achr6P20880_001 Banana cytosol 40.09 45.92
GSMUA_AchrUn_... Banana nucleus 38.31 43.22
CDX84804 Canola nucleus 22.27 38.46
GSMUA_Achr4P07470_001 Banana endoplasmic reticulum, plasma membrane 42.54 38.35
CDY14665 Canola plastid 34.52 38.08
CDY16242 Canola plastid 34.52 37.9
CDX78047 Canola plastid 35.19 37.8
CDX73675 Canola cytosol, mitochondrion, plastid 35.41 37.5
CDY21432 Canola cytosol, nucleus, plastid 31.63 36.6
CDY23176 Canola cytosol, plastid 34.52 36.56
CDY70872 Canola nucleus 30.51 35.58
CDX84954 Canola plastid 31.18 33.18
CDY03879 Canola cytosol, mitochondrion 30.51 32.78
GSMUA_Achr4P03080_001 Banana mitochondrion, nucleus, peroxisome, plasma membrane 46.1 32.34
CDY51591 Canola cytosol, mitochondrion 30.07 32.3
CDY27587 Canola plastid 31.18 32.18
CDY36134 Canola plastid 30.07 31.99
CDY24427 Canola plastid 29.62 31.52
Protein Annotations
Gene3D:2.130.10.10MapMan:35.1EnsemblPlants:CDX77053ProteinID:CDX77053ProteinID:CDX77053.1InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00127625001InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986PFAM:PF00400PRINTS:PR00320PFscan:PS50082PFscan:PS50294PANTHER:PTHR22844
PANTHER:PTHR22844:SF128SMART:SM00320SUPFAM:SSF50978UniParc:UPI0004EE59F6InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeat
InterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg:::
Description
BnaC04g38480D
Coordinates
chrLK031809:+:732886..734235
Molecular Weight (calculated)
49263.2 Da
IEP (calculated)
7.802
GRAVY (calculated)
-0.375
Length
449 amino acids
Sequence
(BLAST)
001: MMHPDPNLSS AMTDQTEDEY GLRNSSASAV GTGMYGRMSC EGSPVMMSPW NQASPFTQTE WSNVDENLPQ NGLIGSLVRE EGHIYSLAAT KDLLYTGSDS
101: KNIRVWKNLK EFSAFKCNSG LVKAIVISGE KIFTGHQDGK IRVWKVSPKN QSSHKRSGTL PTLKDIFKAS LKPSNYVEVK KNRTALWIKH ADAVSCLSLN
201: EEQGLLYSAS WDRTIKVWRI SDSKCLESIP AHDDAVNSVV STTEAIVFSG SADGTVKAWK REQQGKHTKH TLMQTLTKQE TAITALAVNK NGTAVYFGSS
301: DGLVNFWERD QKQLNYGGVL EGHKLAVLCL EVAGSLVFSG SADKTICVWK RDGNIHTCLS VLTGHTGPVK CLAVEENLEV SERKDHKWIV YSGSLDKSVK
401: VWGVSESFID MNNMCTMQQQ QHVISHSEVV MSDGSFSSSA GGASSHQRG
Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)
001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH
Arabidopsis Description
JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.