Factsheet for GSMUA_Achr4P03080_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus, plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, peroxisome, plasma membrane
Any Predictor:	mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	45.78	78.55
GSMUA_Achr3P30740_001	Banana	cytosol	36.25	66.29
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	49.38	63.45
AT1G47610.1	Thale cress	cytosol	27.81	50.71
Bra015611.1-P	Field mustard	cytosol	28.75	50.69
CDY06729	Canola	cytosol	28.59	50.41
VIT_18s0001g11600.t01	Wine grape	nucleus	35.47	49.78
CDY70402	Canola	cytosol	28.12	49.72
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	37.66	49.59
TraesCS5D01G389000.1	Wheat	cytosol	36.72	49.47
TraesCS5B01G382700.1	Wheat	cytosol	36.72	49.47
TraesCS5A01G379200.1	Wheat	cytosol	36.72	49.27
Os03t0738700-01	Rice	plasma membrane	37.5	49.08
HORVU5Hr1G093830.1	Barley	cytosol	36.72	49.06
CDY48182	Canola	nucleus	32.34	46.1
CDX77053	Canola	cytosol	32.34	46.1
Bra034310.1-P	Field mustard	nucleus	32.34	46.1
GSMUA_Achr6P20880_001	Banana	cytosol	27.81	45.41
Bra007751.1-P	Field mustard	nucleus	31.88	45.33
GSMUA_Achr9P09670_001	Banana	plastid	25.78	44.84
CDY11480	Canola	cytosol	32.19	44.3
CDX76704	Canola	cytosol	32.19	44.3
AT2G26490.1	Thale cress	cytosol	32.03	44.09
GSMUA_Achr7P08190_001	Banana	cytosol	22.66	43.94
KRH15278	Soybean	cytosol	24.84	43.68
GSMUA_AchrUn_...	Banana	nucleus	27.03	43.47
PGSC0003DMT400008621	Potato	mitochondrion	29.06	43.26
GSMUA_Achr9P26470_001	Banana	nucleus	27.97	43.24
Solyc07g025140.2.1	Tomato	cytosol	29.69	42.99
PGSC0003DMT400016680	Potato	cytosol	29.69	42.6
Solyc04g079700.2.1	Tomato	cytosol	29.53	42.57
PGSC0003DMT400039941	Potato	cytosol	26.88	42.26
Solyc12g088980.1.1	Tomato	cytosol	26.72	42.12
KRH05757	Soybean	nucleus	30.47	41.85
GSMUA_Achr6P34640_001	Banana	plastid	25.31	41.22
GSMUA_Achr2P17180_001	Banana	golgi	27.97	38.17
GSMUA_Achr11P...	Banana	cytosol	19.06	32.8
GSMUA_Achr6P36100_001	Banana	cytosol	19.22	31.3
GSMUA_Achr9P07610_001	Banana	nucleus	18.28	28.75
GSMUA_Achr3P17140_001	Banana	cytosol	19.06	27.48
GSMUA_Achr7P19910_001	Banana	cytosol	18.12	26.36
GSMUA_Achr10P...	Banana	nucleus	18.75	25.53
GSMUA_Achr8P28630_001	Banana	cytosol	17.81	22.18

Protein Annotations

MapMan:19.4.5.3	Gene3D:2.130.10.10	Gene3D:3.40.390.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004222
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005576	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008237	GO:GO:0008270	GO:GO:0016787	GO:GO:0019538	GO:GO:0031012
EnsemblPlantsGene:GSMUA_Achr4G03080_001	EnsemblPlants:GSMUA_Achr4P03080_001	EnsemblPlants:GSMUA_Achr4T03080_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:IPR024079	UniProt:M0SKM5	InterPro:MetalloPept_cat_dom_sf	PFAM:PF00400	PFAM:PF00413	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF145	InterPro:Pept_M10_metallopeptidase	SMART:SM00320	SUPFAM:SSF50978
SUPFAM:SSF55486	UniParc:UPI0002954F81	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

Putative F-box/WD repeat-containing protein sel-10 [Source:GMGC_GENE;Acc:GSMUA_Achr4G03080_001]

Coordinates

chr4:+:2501415..2503810

Molecular Weight (calculated)

69115.7 Da

IEP (calculated)

8.123

GRAVY (calculated)

-0.199

Length

640 amino acids

Sequence
(BLAST)

001: MGRTGGEGRE RRERQATFPS SPLCGRAHSP RIFPSVALSH SDRLSQSCFA FLFPFSYLYI HPVPLLQPLL LPASACCSSL RISSSYILLV QSFTCSPAIL
101: PLMGEGKDSS GGSGHGAMHA NVPMPHSDPL IHHSSADDDY YARHSSSSAT ASSGYYSDHP TAASGDSSPF VMSPWHQSAP YPPCDPASAD AAALPCTGLI
201: GSLKDFAGFK SSSGLVKAIV IAADRIFTGH QDGRIRSWRV SPKDATVHKR IGTLPRLKDV LRSSLNPSNY VEIRRNRSAL WIRHSDAISC LSLNEEQGLL
301: YSGSWDKTFK AWRISDSKCL ESVVAHDDAV NSVVAAFDGL VFTGSADGTV KMWRREKQGK GIKHTLVQTL LKQEFAMAVL CLSAAGSLLL SGSADKTICV
401: WRREGAAHTC LSVLSGHSSP VKCLAMETEA GSEENGGSYA AARWIVYSGS LDKSVKVWRV SEQAPLELEQ SGAYGGSNSG GSSGGTGQAY ANSLRDTVTE
501: FMVFSIIYHA IYIQKKEKEK GKRSLCVCCK EGTKIVLLQK ISSGNNGLEN TYAFARKPKI FLTCSLATHR SIRGEEVRFV ESTKYQVADF KVGFYNGDHD
601: DGKPFDGVLG LLAHAFSSES GSLHLDAAEP WVVDFGKEEL

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.