Factsheet for VIT_18s0001g11600.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034310.1-P	Field mustard	nucleus	69.3	70.38
CDY48182	Canola	nucleus	69.3	70.38
CDX77053	Canola	cytosol	68.86	69.93
Bra007751.1-P	Field mustard	nucleus	68.86	69.78
CDX76704	Canola	cytosol	70.83	69.46
CDY11480	Canola	cytosol	70.61	69.25
AT2G26490.1	Thale cress	cytosol	70.18	68.82
PGSC0003DMT400016680	Potato	cytosol	66.45	67.94
VIT_03s0063g01790.t01	Wine grape	cytosol	66.01	67.64
PGSC0003DMT400008621	Potato	mitochondrion	63.16	66.98
Solyc07g025140.2.1	Tomato	cytosol	64.91	66.97
Solyc04g079700.2.1	Tomato	cytosol	65.13	66.89
KRH15278	Soybean	cytosol	52.63	65.93
PGSC0003DMT400039941	Potato	cytosol	58.55	65.6
Solyc12g088980.1.1	Tomato	cytosol	58.11	65.27
KRH05757	Soybean	nucleus	65.57	64.16
GSMUA_Achr3P30740_001	Banana	cytosol	47.81	62.29
TraesCS5D01G389000.1	Wheat	cytosol	59.87	57.47
TraesCS5B01G382700.1	Wheat	cytosol	59.87	57.47
TraesCS5A01G379200.1	Wheat	cytosol	59.87	57.23
HORVU5Hr1G093830.1	Barley	cytosol	60.09	57.2
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	60.96	57.2
VIT_07s0255g00110.t01	Wine grape	nucleus	61.84	56.63
Os03t0738700-01	Rice	plasma membrane	60.53	56.44
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	44.52	54.42
GSMUA_Achr6P20880_001	Banana	cytosol	42.98	50.0
GSMUA_AchrUn_...	Banana	nucleus	42.32	48.49
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	47.37	43.37
VIT_01s0026g00880.t01	Wine grape	cytosol	35.75	38.17
VIT_13s0019g01680.t01	Wine grape	plastid	32.46	37.28
VIT_17s0000g09730.t01	Wine grape	cytosol, plastid	32.46	37.0
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	32.89	36.95
VIT_04s0008g03540.t01	Wine grape	cytosol	35.09	35.71
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	49.78	35.47
VIT_01s0137g00360.t01	Wine grape	cytosol	33.11	34.95
VIT_09s0002g04040.t01	Wine grape	nucleus	32.02	32.59
VIT_09s0002g04050.t01	Wine grape	cytosol	30.92	31.47
VIT_09s0002g04060.t01	Wine grape	nucleus	30.92	14.86

Protein Annotations

EntrezGene:100262588	wikigene:100262588	Gene3D:2.130.10.10	MapMan:35.1	EMBL:AM454828	ProteinID:CAN61238
ProteinID:CAN61238.1	ProteinID:CCB45901	ProteinID:CCB45901.1	UniProt:F6H024	EMBL:FN595227	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EntrezGene:LOC100262588	wikigene:LOC100262588	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF128	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0001985396	ArrayExpress:VIT_18s0001g11600
EnsemblPlantsGene:VIT_18s0001g11600	EnsemblPlants:VIT_18s0001g11600.t01	unigene:Vvi.15617	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_002283775	RefSeq:XP_002283775.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:-:9890461..9892608

Molecular Weight (calculated)

49638.4 Da

IEP (calculated)

8.905

GRAVY (calculated)

-0.399

Length

456 amino acids

Sequence
(BLAST)

001: MLEETNSIPR PKYRNIMHSD PNLSSSIPTE DDYPIRNSSA SAASPGFYDN RLSGEGSPMT MSPWNQTSSE AKSSWSRFEE NLPQNGLIGS LTREEGHIYS
101: LAATGELLYT GSDSKNIRVW KNLKEFSGFK SNSGLVKAIV ISGEKIFTGH QDGKIRVWKV SPKNASVHKR AGTLPTLKDI FKSSINPSNY VEVRRRRSAL
201: WIRHSDAISC LSLNEEQGLL YSASWDRTFK VWRISDSKCL ESISAHDDAV NSVVASSEGM VFTGSADGSV KVWRRELHGK GTKHAFVQTL LKQECAVTAL
301: CVNTSGSVVY CGSSDGLVNF WEREKQLSHG GVLRGHKVAV LCLAAAANLV FSGSADKTIC VWRREGVVHT CLSVLTGHTG PVKCLAVGED KESTAKNQRW
401: VVYSGSLDKS VKVWSVSDMG IDPQQQTVEG GVSSFPSEQT DSVSSPGGGG GSHKKR

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.