Factsheet for VIT_01s0026g00880.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	61.83	65.02
Solyc05g006340.2.1	Tomato	cytosol	60.42	62.17
PGSC0003DMT400040333	Potato	cytosol	62.3	61.72
CDY16242	Canola	plastid	59.02	61.61
Bra024637.1-P	Field mustard	plastid	58.78	61.52
AT1G24130.1	Thale cress	cytosol, plastid	59.72	61.45
KRH74694	Soybean	nucleus	62.3	61.43
CDY14665	Canola	plastid	58.55	61.43
PGSC0003DMT400004842	Potato	plastid	60.89	60.32
Solyc04g005020.2.1	Tomato	plastid	60.19	59.91
KRH69465	Soybean	nucleus	60.66	59.0
GSMUA_Achr6P36100_001	Banana	cytosol	45.9	49.87
Os02t0740900-01	Rice	plastid	44.96	47.17
GSMUA_Achr7P19910_001	Banana	cytosol	47.78	46.36
HORVU7Hr1G039810.1	Barley	plastid	40.98	45.57
EES07284	Sorghum	cytosol	45.9	44.95
TraesCS7B01G100800.1	Wheat	cytosol	40.52	44.82
Zm00001d017994_P001	Maize	cytosol	37.24	44.66
VIT_01s0137g00360.t01	Wine grape	cytosol	43.79	43.29
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	40.28	43.11
VIT_17s0000g09730.t01	Wine grape	cytosol, plastid	37.7	40.25
TraesCS7A01G195200.1	Wheat	cytosol	41.92	35.94
VIT_13s0019g01680.t01	Wine grape	plastid	33.26	35.77
VIT_18s0001g11600.t01	Wine grape	nucleus	38.17	35.75
TraesCS7D01G196700.1	Wheat	cytosol	41.45	35.61
VIT_03s0063g01790.t01	Wine grape	cytosol	34.89	33.48
VIT_07s0255g00110.t01	Wine grape	nucleus	36.53	31.33
VIT_04s0008g03540.t01	Wine grape	cytosol	31.15	29.69
VIT_09s0002g04040.t01	Wine grape	nucleus	30.21	28.79
VIT_09s0002g04050.t01	Wine grape	cytosol	27.63	26.34
VIT_09s0002g04060.t01	Wine grape	nucleus	30.21	13.59

Protein Annotations

EntrezGene:100260428	wikigene:100260428	Gene3D:2.130.10.10	MapMan:35.1	EMBL:AM442180	ProteinID:CAN76269
ProteinID:CAN76269.1	ProteinID:CCB56625	ProteinID:CCB56625.1	UniProt:F6HPJ7	EMBL:FN596002	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EntrezGene:LOC100260428	wikigene:LOC100260428	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF278	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000210883B	ArrayExpress:VIT_01s0026g00880
EnsemblPlantsGene:VIT_01s0026g00880	EnsemblPlants:VIT_01s0026g00880.t01	unigene:Vvi.18987	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_003631291	RefSeq:XP_003631291.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:9773170..9774555

Molecular Weight (calculated)

47018.6 Da

IEP (calculated)

9.018

GRAVY (calculated)

-0.340

Length

427 amino acids

Sequence
(BLAST)

001: MGFLRCPLSC HKEKESQSRA QAQAQAQAQA HHLHSDSSCL HSESSNSLAS QPSLPSVPSL TSQSRRHEQA ITTHHHCIST LKGHSSYVFS LALAGKFLYS
101: GSSDKEIRIW SRDPSRLETS NDNGVALGNG AVKSLVVLGD KLFSAHQDQK IRVWKVDNDS PHQKYKCMAT LPTLSDRALK LFSASNYVQV RRHKKCTWVH
201: HVDTISALAL SEDGSLLYSA SWDRTFKIWK TTDFRCLESA EKAHDDAINA LVLSTDGIVY TGSADRKIKV WKKHEGEKKH RLVATLEKHK SAVNALALSP
301: DGSVLYSGAC DRSIIVWEKD TSSSGGHMVV AGALRGHTKA ILCLAIVSDL VFSGSADKTV RIWKKGLQRS YSCLAVFEGH RGPVKCLTAA VDNYNGRSNS
401: DDDAAYLIYS GSLDCEIKVW QLRIQCV

Best Arabidopsis Sequence Match ( AT1G24130.1 )
(BLAST)

001: MGLLPCSCPL PCNETRSECE TKSTHHQSES STSSSLLSQP SLPLVPSLSF QHQSSSVDHH CLATLKDKSS YVSSLAVSDK LLYTGSSNSE IRVWPREPPF
101: SPEYSTGDDR NVVANGNGGV KSLVILGDKL ISAHQDHKIR VWKIIDESNR RGQKYKCVAT LPTMNDRFKT LFSSKSYVEV RRHKKCTWVH HVDAVSSLAL
201: SQDGSLLYSA SWDRSFKIWR TSDFKCLDSI EKAHDDAINA IVVSKDGFVY TGSADKKIKV WNKKDKKHSL VATLTKHLSA VNALAISEDG KVLYSGACDR
301: SILVWERLIN GDDEELHMSV VGALRGHRKA IMCLAVASDL VLSGSADKSL RVWRRGLMEK EGYSCLAVLE GHTKPVKSLA VSVSDSDSNS DYSCMVYSGS
401: LDLSLKVWNL RVSSI

Arabidopsis Description

F3I6.5 protein [Source:UniProtKB/TrEMBL;Acc:O48679]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.