Factsheet for Solyc05g006340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040333	Potato	cytosol	93.01	89.56
Solyc04g005020.2.1	Tomato	plastid	63.13	61.07
VIT_01s0026g00880.t01	Wine grape	cytosol	62.17	60.42
KRH74694	Soybean	nucleus	58.31	55.89
AT1G24130.1	Thale cress	cytosol, plastid	55.66	55.66
CDY16242	Canola	plastid	54.7	55.5
CDY14665	Canola	plastid	54.22	55.28
KRH69465	Soybean	nucleus	58.31	55.13
Bra024637.1-P	Field mustard	plastid	53.98	54.9
GSMUA_Achr6P36100_001	Banana	cytosol	43.86	46.31
Zm00001d017994_P001	Maize	cytosol	37.35	43.54
Os02t0740900-01	Rice	plastid	42.17	43.0
HORVU7Hr1G039810.1	Barley	plastid	39.28	42.45
Solyc05g013880.1.1	Tomato	cytosol, plastid	43.37	42.35
TraesCS7B01G100800.1	Wheat	cytosol	39.28	42.23
Solyc03g113850.1.1	Tomato	cytosol, plastid	48.19	42.19
GSMUA_Achr7P19910_001	Banana	cytosol	43.86	41.36
Solyc03g111780.1.1	Tomato	cytosol	39.04	40.4
EES07284	Sorghum	cytosol	42.41	40.37
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	38.31	39.85
Solyc12g088980.1.1	Tomato	cytosol	34.22	34.98
Solyc07g025140.2.1	Tomato	cytosol	35.42	33.26
TraesCS7D01G196700.1	Wheat	cytosol	39.76	33.2
TraesCS7A01G195200.1	Wheat	cytosol	39.52	32.93
Solyc04g079700.2.1	Tomato	cytosol	35.18	32.88
Solyc01g068250.2.1	Tomato	cytosol	32.29	32.21
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	34.22	30.54
Solyc03g044830.2.1	Tomato	nucleus	32.77	29.76
Solyc02g090150.1.1	Tomato	nucleus	32.29	29.65
Solyc12g044320.1.1	Tomato	cytosol, plastid	28.43	26.05

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BWG1	PFAM:PF00400	PRINTS:PR00320
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF278	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:Solyc05g006340.2	EnsemblPlants:Solyc05g006340.2.1	UniParc:UPI00027673C6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:990212..992535

Molecular Weight (calculated)

45661.2 Da

IEP (calculated)

8.571

GRAVY (calculated)

-0.228

Length

415 amino acids

Sequence
(BLAST)

001: MGKIPCPLPS PSKQNSTNSD EFHQIYSDSS LALSRSSSCL YSQPSLPSIP SLTPLSTHSE LLSNTFCAST FTGLSSSVFC LSLAGKHLYT GTSNGEILLR
101: NQEKNHSVVV AQKQSKSSVK SIVIFGDKLF TAHQDHKIRV WKIDNHDHNQ SNYKCIATLP TLNDRCMRLF SAKNYVEIRR HKKCTWVHHV DTVSALAISS
201: DNTLLYSASW DRTFKIWRIL DFKCLESVWN AHDDAINAIA LSKNGYVYTG SADMKIKIWK KERGEKSVHT LISTLEKHKS SVNALALSTD GSILYSGACD
301: RSIIVWEKDS GGDKMVVSGA LRGHTKAILC LSVVDDLVCS GSADKTVRIW MKGIGKSYSC LAVLEGHNGP VKCLTASSDN SNSNSNSDDF GCGNSYVVYS
401: GSLDCDIKVW KIWVP

Best Arabidopsis Sequence Match ( AT1G24130.1 )
(BLAST)

001: MGLLPCSCPL PCNETRSECE TKSTHHQSES STSSSLLSQP SLPLVPSLSF QHQSSSVDHH CLATLKDKSS YVSSLAVSDK LLYTGSSNSE IRVWPREPPF
101: SPEYSTGDDR NVVANGNGGV KSLVILGDKL ISAHQDHKIR VWKIIDESNR RGQKYKCVAT LPTMNDRFKT LFSSKSYVEV RRHKKCTWVH HVDAVSSLAL
201: SQDGSLLYSA SWDRSFKIWR TSDFKCLDSI EKAHDDAINA IVVSKDGFVY TGSADKKIKV WNKKDKKHSL VATLTKHLSA VNALAISEDG KVLYSGACDR
301: SILVWERLIN GDDEELHMSV VGALRGHRKA IMCLAVASDL VLSGSADKSL RVWRRGLMEK EGYSCLAVLE GHTKPVKSLA VSVSDSDSNS DYSCMVYSGS
401: LDLSLKVWNL RVSSI

Arabidopsis Description

F3I6.5 protein [Source:UniProtKB/TrEMBL;Acc:O48679]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.