Factsheet for Solyc03g044830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059001	Potato	extracellular	95.84	95.42
Solyc02g090150.1.1	Tomato	nucleus	68.71	69.47
VIT_07s0255g00110.t01	Wine grape	nucleus	63.02	57.83
Solyc12g088980.1.1	Tomato	cytosol	50.33	56.65
Solyc07g025140.2.1	Tomato	cytosol	53.17	54.98
KRH28540	Soybean	nucleus	54.05	53.93
KRH76925	Soybean	nucleus	54.05	53.7
Solyc04g079700.2.1	Tomato	cytosol	51.86	53.38
CDY02088	Canola	cytosol, mitochondrion, nucleus	52.74	53.08
CDY23013	Canola	cytosol	52.74	52.97
Bra036080.1-P	Field mustard	cytosol	52.74	52.28
CDY17780	Canola	cytosol	52.74	52.28
CDY52834	Canola	cytosol	52.52	51.95
Bra012903.1-P	Field mustard	cytosol	52.74	51.94
AT3G50390.1	Thale cress	cytosol	53.17	51.81
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	52.08	51.18
Solyc01g068250.2.1	Tomato	cytosol	30.2	33.17
Solyc05g006340.2.1	Tomato	cytosol	29.76	32.77
Solyc04g005020.2.1	Tomato	plastid	29.76	31.7
Solyc05g013880.1.1	Tomato	cytosol, plastid	28.01	30.12
Solyc03g111780.1.1	Tomato	cytosol	26.26	29.93
Solyc12g044320.1.1	Tomato	cytosol, plastid	28.45	28.7
Solyc03g113850.1.1	Tomato	cytosol, plastid	29.76	28.69

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BG96	PFAM:PF00400	PRINTS:PR00320
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF270	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:Solyc03g044830.2	EnsemblPlants:Solyc03g044830.2.1	UniParc:UPI0002768548	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:10641507..10643308

Molecular Weight (calculated)

50900.7 Da

IEP (calculated)

7.190

GRAVY (calculated)

-0.392

Length

457 amino acids

Sequence
(BLAST)

001: MSMEDQSSVP RRQTFGSMLQ SDPNHDEDEY VNFRTCDQSG LANYDHNHRV SGLSSDYNMM ISPSPSDECY YSLSTTPYVT PSIDLTSSPL SKSPWSSHVE
101: TYLYTGLIGS LVREEGHIYS LAASGDLLYT GSDSKNIRIW KSQKEFAGFK SNSGLVKAII ISGERIFTGH QDGKVRVWKV SPNDPNNYRR IGTLPTLKAY
201: IKSSMNPNNY VEVRRNRNSV WIRHFDAISS LSMSEDQNLL YSASWDKTIK VWRASDFKCL ESISAHEDAV NSVVVGFDGL VFSGSADGTV KVWRRELQGN
301: KTKHFFSQTL LNQECAVTSL VVDPSSNFLY CGSSDGFVNF WERAKFLSHG GVLRGHKSAV LCLATAGNLV FSGSADTNIC VWRREGCDHI CLSVLKGHSG
401: PVKCMAVEED HGPTINGDRQ FIVYSGSLDK SVKIWRVSPC PPHMQVQLQD QSQWGTS

Best Arabidopsis Sequence Match ( AT3G18950.1 )
(BLAST)

001: MVIATETTSS SHHRRLTFAS FLNSDPAADE EEQSHGVDDI INPSSSNKNI NKDVHHNYRQ SQSNASTTSG ESSPNQVLSP WNQTYSPYYT DTTNTPSMSP
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG

Arabidopsis Description

En/Spm-like transposon protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LJ71]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.