Factsheet for Solyc04g005020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004842	Potato	plastid	92.31	91.88
Solyc05g006340.2.1	Tomato	cytosol	61.07	63.13
VIT_01s0026g00880.t01	Wine grape	cytosol	59.91	60.19
AT1G24130.1	Thale cress	cytosol, plastid	54.78	56.63
CDY16242	Canola	plastid	53.61	56.23
Bra024637.1-P	Field mustard	plastid	53.38	56.13
CDY14665	Canola	plastid	52.68	55.53
KRH74694	Soybean	nucleus	55.24	54.73
KRH69465	Soybean	nucleus	54.55	53.3
GSMUA_Achr6P36100_001	Banana	cytosol	43.59	47.58
Os02t0740900-01	Rice	plastid	41.72	43.98
GSMUA_Achr7P19910_001	Banana	cytosol	44.52	43.41
Solyc03g113850.1.1	Tomato	cytosol, plastid	47.79	43.25
TraesCS7B01G100800.1	Wheat	cytosol	38.69	43.01
HORVU7Hr1G039810.1	Barley	plastid	38.46	42.97
Zm00001d017994_P001	Maize	cytosol	35.2	42.42
EES07284	Sorghum	cytosol	42.89	42.2
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	38.23	41.1
Solyc05g013880.1.1	Tomato	cytosol, plastid	39.86	40.24
Solyc03g111780.1.1	Tomato	cytosol	34.73	37.16
Solyc12g088980.1.1	Tomato	cytosol	31.93	33.74
TraesCS7D01G196700.1	Wheat	cytosol	38.46	33.2
TraesCS7A01G195200.1	Wheat	cytosol	38.46	33.13
Solyc07g025140.2.1	Tomato	cytosol	33.8	32.81
Solyc01g068250.2.1	Tomato	cytosol	31.47	32.45
Solyc04g079700.2.1	Tomato	cytosol	32.87	31.76
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	34.03	31.4
Solyc02g090150.1.1	Tomato	nucleus	32.17	30.53
Solyc03g044830.2.1	Tomato	nucleus	31.7	29.76
Solyc12g044320.1.1	Tomato	cytosol, plastid	26.81	25.39

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BNA8	PFAM:PF00400	PRINTS:PR00320
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF278	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:Solyc04g005020.2	EnsemblPlants:Solyc04g005020.2.1	UniParc:UPI0002765FC9	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:28008..29497

Molecular Weight (calculated)

47705.8 Da

IEP (calculated)

8.813

GRAVY (calculated)

-0.254

Length

429 amino acids

Sequence
(BLAST)

001: MGFLPCSLLC QAKKKPLDSC DQTESRHLSS NSSSSLISLS SRSLSLSSRS FSSQPSLPSI PSLSISSSQV EHLSNTFHHC LATLTGHSSY IFCLSIAEKH
101: LYYGSSNGEI LVCDINSSKQ DNCLKEKTVC QSGSAIKSIV MMGDKLFSSH QDHKIRVWKI DNETPNRNYK SIATLPTIND RCVKLFWTRN YVQVRRHKKC
201: TWVHHVDTVS ALALSKDGSL LYSASWDRTF KIWRSSDFKC LESVWNAHDD AINSIVVSNN GDVYTGSADK KIKIWTKQQE GGSNKHTLMT ALEKHKSAVN
301: ALALSRDGCV LYSGACDRSI IVWEKLQVLG AIRGHKKSIL CLAVVSNDLL CSGSADKTVR IWKRGLGKFC YSCLAVFEGH RGPVKCLNAT LDTQKYDDND
401: SCSGNSYIIY SGSLDCDVKV WKLWVPNYL

Best Arabidopsis Sequence Match ( AT1G24130.1 )
(BLAST)

001: MGLLPCSCPL PCNETRSECE TKSTHHQSES STSSSLLSQP SLPLVPSLSF QHQSSSVDHH CLATLKDKSS YVSSLAVSDK LLYTGSSNSE IRVWPREPPF
101: SPEYSTGDDR NVVANGNGGV KSLVILGDKL ISAHQDHKIR VWKIIDESNR RGQKYKCVAT LPTMNDRFKT LFSSKSYVEV RRHKKCTWVH HVDAVSSLAL
201: SQDGSLLYSA SWDRSFKIWR TSDFKCLDSI EKAHDDAINA IVVSKDGFVY TGSADKKIKV WNKKDKKHSL VATLTKHLSA VNALAISEDG KVLYSGACDR
301: SILVWERLIN GDDEELHMSV VGALRGHRKA IMCLAVASDL VLSGSADKSL RVWRRGLMEK EGYSCLAVLE GHTKPVKSLA VSVSDSDSNS DYSCMVYSGS
401: LDLSLKVWNL RVSSI

Arabidopsis Description

F3I6.5 protein [Source:UniProtKB/TrEMBL;Acc:O48679]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.