CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74694	Soybean	nucleus	84.28	85.45
VIT_01s0026g00880.t01	Wine grape	cytosol	59.0	60.66
Solyc05g006340.2.1	Tomato	cytosol	55.13	58.31
KRH57017	Soybean	plastid	51.71	57.61
CDY14665	Canola	plastid	53.08	57.25
AT1G24130.1	Thale cress	cytosol, plastid	53.99	57.11
PGSC0003DMT400040333	Potato	cytosol	56.04	57.08
CDY16242	Canola	plastid	52.85	56.72
KRH54449	Soybean	plastid	54.21	56.53
Bra024637.1-P	Field mustard	plastid	52.39	56.37
KRH63468	Soybean	plastid	52.62	55.26
PGSC0003DMT400004842	Potato	plastid	53.76	54.76
KRH03365	Soybean	nucleus, plastid	50.57	54.68
Solyc04g005020.2.1	Tomato	plastid	53.3	54.55
GSMUA_Achr6P36100_001	Banana	cytosol	42.82	47.84
Os02t0740900-01	Rice	plastid	41.46	44.72
HORVU7Hr1G039810.1	Barley	plastid	37.59	42.97
EES07284	Sorghum	cytosol	42.14	42.43
Zm00001d017994_P001	Maize	cytosol	34.4	42.42
TraesCS7B01G100800.1	Wheat	cytosol	37.13	42.23
KRH43090	Soybean	plastid	41.23	42.0
KRH57169	Soybean	cytosol, plasma membrane	32.35	41.64
GSMUA_Achr7P19910_001	Banana	cytosol	41.69	41.59
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	35.76	39.35
KRH03884	Soybean	cytosol	32.57	38.03
TraesCS7D01G196700.1	Wheat	cytosol	37.81	33.4
KRH39863	Soybean	cytosol, plastid	31.21	32.93
TraesCS7A01G195200.1	Wheat	cytosol	37.13	32.73
KRH05757	Soybean	nucleus	33.94	31.97
KRH15278	Soybean	cytosol	26.42	31.87
KRH76925	Soybean	nucleus	32.57	31.09
KRH28540	Soybean	nucleus	32.35	31.0
KRH52729	Soybean	cytosol	27.33	26.26
KRH62060	Soybean	cytosol	23.92	25.3
KRH23424	Soybean	plastid	23.92	23.81
KRH09907	Soybean	cytosol, plastid	12.76	21.46
KRH24543	Soybean	cytosol, nucleus	29.84	17.35

Protein Annotations

EntrezGene:100784166	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02000716	EnsemblPlantsGene:GLYMA_02G029200	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K7K646
EnsemblPlants:KRH69465	ProteinID:KRH69465	ProteinID:KRH69465.1	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF278	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002336D2E
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:2660823..2662537

Molecular Weight (calculated)

48675.2 Da

IEP (calculated)

8.102

GRAVY (calculated)

-0.500

Length

439 amino acids

Sequence
(BLAST)

001: MGLLQRPLCC HSQQDQQQQP PQSHDHLHFE SSTSSSLSSQ ASLPSIPSLT PQKLHHPEEQ PQTTHHKLVT TVKGHTSTIF SLALHGKSLY SASSNGEIRA
101: CSRDPTSTEL KYISGEQPLP NTTIVVNSNA PIKSLIVSHD KLFTAHQDHK IRVWKTTDQP GNNNNNPNYY KCVASLPTLH DRFSKLFSSE NYVEIRRHKK
201: RTWVHHVDTV SALALSQDGS LLYSASWDRT FKIWRTSDFK CLESVKNAHE DAINSLILSN NGIVYTGSAD TKIKMWKKLE GDKKHSLIGT LEKHKSAVNA
301: LALNSDGSVL YSGACDRSIL VWEGDEDNNN NMVVVGALRG HTKAILCLVV ESDLVCSGSA DNSVRIWRRS VENEKKSYYS CLAVLESHRR PVKCLAMAVD
401: SNSGGGGGGP HEDDDSRSYL VYSAGLDCDI KVWQIRVPL

Best Arabidopsis Sequence Match ( AT1G24130.1 )
(BLAST)

001: MGLLPCSCPL PCNETRSECE TKSTHHQSES STSSSLLSQP SLPLVPSLSF QHQSSSVDHH CLATLKDKSS YVSSLAVSDK LLYTGSSNSE IRVWPREPPF
101: SPEYSTGDDR NVVANGNGGV KSLVILGDKL ISAHQDHKIR VWKIIDESNR RGQKYKCVAT LPTMNDRFKT LFSSKSYVEV RRHKKCTWVH HVDAVSSLAL
201: SQDGSLLYSA SWDRSFKIWR TSDFKCLDSI EKAHDDAINA IVVSKDGFVY TGSADKKIKV WNKKDKKHSL VATLTKHLSA VNALAISEDG KVLYSGACDR
301: SILVWERLIN GDDEELHMSV VGALRGHRKA IMCLAVASDL VLSGSADKSL RVWRRGLMEK EGYSCLAVLE GHTKPVKSLA VSVSDSDSNS DYSCMVYSGS
401: LDLSLKVWNL RVSSI

Arabidopsis Description

F3I6.5 protein [Source:UniProtKB/TrEMBL;Acc:O48679]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.