CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34380.1	KRG89812	AT2G41090.1	17360592
AT4G34380.1	KRG94975	AT2G41090.1	17360592
AT4G34380.1	KRH18664	AT2G41090.1	17360592
AT4G34380.1	KRG89812	AT2G41100.1	17360592
AT4G34380.1	KRG94975	AT2G41100.1	17360592
AT4G34380.1	KRH18664	AT2G41100.1	17360592
AT4G34380.1	KRH31638	AT4G14640.1	17360592
AT4G34380.1	KRH69070	AT4G14640.1	17360592
AT4G34380.1	KRG89812	AT5G21274.1	17360592
AT4G34380.1	KRG94975	AT5G21274.1	17360592
AT4G34380.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0063g01790.t01	Wine grape	cytosol	32.19	54.61
KRH15278	Soybean	cytosol	23.58	48.9
KRH05757	Soybean	nucleus	29.93	48.5
AT4G34380.1	Thale cress	cytosol	31.66	48.28
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	29.54	47.85
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	29.4	47.74
KRH28540	Soybean	nucleus	28.74	47.38
KRH76925	Soybean	nucleus	28.48	46.74
CDX69050	Canola	cytosol	29.14	46.51
CDY45305	Canola	cytosol	30.07	46.42
Bra011525.1-P	Field mustard	cytosol	29.4	46.35
Bra017646.1-P	Field mustard	cytosol	29.93	46.22
CDY46256	Canola	cytosol	29.93	46.22
CDX72479	Canola	cytosol	29.8	46.01
CDX75426	Canola	cytosol	29.14	45.93
Bra034622.1-P	Field mustard	cytosol	29.54	45.6
CDX76276	Canola	cytosol	29.4	45.4
KRH57169	Soybean	cytosol, plasma membrane	16.42	36.36
KRH57017	Soybean	plastid	17.88	34.26
KRH63468	Soybean	plastid	18.28	33.01
KRH03884	Soybean	cytosol	16.29	32.71
KRH39863	Soybean	cytosol, plastid	17.88	32.45
KRH03365	Soybean	nucleus, plastid	17.35	32.27
KRH54449	Soybean	plastid	17.62	31.59
KRH62060	Soybean	cytosol	17.22	31.33
KRH43090	Soybean	plastid	17.75	31.09
KRH52729	Soybean	cytosol	18.68	30.85
KRH74694	Soybean	nucleus	17.35	30.25
KRH69465	Soybean	nucleus	17.35	29.84
KRH23424	Soybean	plastid	14.57	24.94
KRH09907	Soybean	cytosol, plastid	7.02	20.31

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A0R0HE20	EMBL:ACUP02007178	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_12G047800
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KRH24543	ProteinID:KRH24543	ProteinID:KRH24543.1	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0006ED7B95
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:+:3464130..3468147

Molecular Weight (calculated)

80462.9 Da

IEP (calculated)

9.868

GRAVY (calculated)

-0.921

Length

755 amino acids

Sequence
(BLAST)

001: EGHIYSLAVS GNLLYTGSDS KNIRVWKDLK DFTGFKSSSG LVKTIVISGG KIFTGHQDGK IRVWKVSSKN PSNHKRIGSL PTFKEYVKSS MNPKNYVEVR
101: RHRNAVKVKH FDAVSSLSLD EEEGLLYSGS WDKTLKVWRV ADSKCLESIS AHDDAVNAVA AAFGGCVLTG SADGTVKMWR RENQGKKFKH VLDRVLLKRE
201: NAVTALAVNR LATVVYCGSS DGLVNFWERD QKGGFLHGGV LRGHKLAVLC LAAAGNLVFS GSADKNVCVW KRDENGFHTC HSVLTGHSGP VKCIAVEEAE
301: PPPEGRCEKG NLRWIVYTGS LDKSVKVWCV SEHAPDASVF QSWATPYHSS SSAAGFSYSS PGKISVNSSP AWSYSSPRRI GVSSVSAGFN YSSPTSFGLN
401: SSSSPAGGMI YSSPRKINVS NNSGNSNRNG DSTQSFDNDD DDDDRCIFNG NGTNNRSSST KSGDNGIGSN NRDSVKSSGN GENNRNNGSS KSGDNGSNNV
501: NRDNAKSGGN DSNNRISDSS KSGGDGSNSR DSDSAYGSGN NIRNKDGAKS NGNSSNIDSS YGNRNSIHNS DSAKNNPRNG DDAYGNKNNN HNAKSNGNSN
601: DYRNSNSVKS SGTSNGIRNS DCAKSNSNGA SSNYSQTSED AKSNANGNNN SSCKSDGASG NGKSNYNRNS DGPKSNAIGN DNQNSGAKSS DNGNEKINSN
701: RSSDGAKSNN IQNSNIAINY SKGKRNEDRK RGGAYAGDKR WTTFTFNVQK KANTA

Best Arabidopsis Sequence Match ( AT4G34380.1 )
(BLAST)

001: MRNETGGTMV VDLQTDPYNN IHSRHNLSYD LSEGPKPRPK FGNISKTDHD EIFPPDDPII INSNVTHQRF SSVSASTMSS GPASGEGSPC VMSPWARVSP
101: PWGADFNEDN VLETNGLIGS IVRKEGHIYS LAASGDLLYT GSDSKNIRVW KNLKEHAGFK SSSGLIKAIV IFGDRIFTGH QDGKIRIWKV SKRKPGKHKR
201: VGTLPTFKSM VKSSVNPKHF MEVRRNRNSV KTKHNDAVSS LSLDVELGLL YSSSWDTTIK VWRIADSKCL ESIHAHDDAI NSVMSGFDDL VFTGSADGTV
301: KVWKRELQGK GTKHTLAQVL LKQENAVTAL AVKSQSSIVY CGSSDGLVNY WERSKRSFTG GILKGHKSAV LCLGIAGNLL LSGSADKNIC VWRRDPSDKS
401: HQCLSVLTGH MGPVKCLAVE EERACHQGAK ASVAEGDRKW IIYSGSLDKS VKVWRVSERM ATWKEMDEPA ASSERKSSSS PHEGSGAWSS RNVEK

Arabidopsis Description

At4g34380 [Source:UniProtKB/TrEMBL;Acc:Q9SZ03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.