Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69050 | Canola | cytosol | 78.59 | 82.24 |
| CDY46256 | Canola | cytosol | 80.61 | 81.6 |
| CDX75426 | Canola | cytosol | 78.79 | 81.42 |
| Bra011525.1-P | Field mustard | cytosol | 78.79 | 81.42 |
| Bra034622.1-P | Field mustard | cytosol | 80.2 | 81.19 |
| CDX76276 | Canola | cytosol | 80.0 | 80.98 |
| CDY45305 | Canola | cytosol | 79.19 | 80.16 |
| CDX72479 | Canola | cytosol | 79.19 | 80.16 |
| Bra017646.1-P | Field mustard | cytosol | 79.19 | 80.16 |
| VIT_03s0063g01790.t01 | Wine grape | cytosol | 53.94 | 60.0 |
| AT1G47610.1 | Thale cress | cytosol | 42.42 | 59.83 |
| AT2G26490.1 | Thale cress | cytosol | 52.73 | 56.13 |
| PGSC0003DMT400066737 | Potato | cytosol, mitochondrion | 50.71 | 53.86 |
| AT3G18950.1 | Thale cress | cytosol, nucleus, plastid | 51.11 | 53.49 |
| Solyc01g109120.2.1 | Tomato | cytosol, mitochondrion | 50.1 | 53.33 |
| AT1G49450.1 | Thale cress | nucleus | 49.09 | 51.59 |
| AT3G50390.1 | Thale cress | cytosol | 45.86 | 48.4 |
| AT1G24130.1 | Thale cress | cytosol, plastid | 29.9 | 35.66 |
| AT5G50120.1 | Thale cress | nucleus | 26.87 | 34.28 |
| AT3G51930.1 | Thale cress | cytosol, plastid | 27.88 | 33.25 |
| AT1G24530.1 | Thale cress | cytosol, plastid | 27.47 | 32.54 |
| KRH24543 | Soybean | cytosol, nucleus | 48.28 | 31.66 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EntrezGene:829588 | UniProt:A0A178UYD7 | ProteinID:AEE86366.1 | EMBL:AK118385 |
| ArrayExpress:AT4G34380 | EnsemblPlantsGene:AT4G34380 | RefSeq:AT4G34380 | TAIR:AT4G34380 | RefSeq:AT4G34380-TAIR-G | EnsemblPlants:AT4G34380.1 |
| TAIR:AT4G34380.1 | Unigene:At.31507 | EMBL:BT005888 | ProteinID:CAB36715.1 | ProteinID:CAB80155.1 | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | RefSeq:NP_195164.1 | ProteinID:OAO98999.1 | PFAM:PF00400 | PRINTS:PR00320 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR22844 | PANTHER:PTHR22844:SF145 | UniProt:Q9SZ03 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI0000048A5F | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
At4g34380 [Source:UniProtKB/TrEMBL;Acc:Q9SZ03]
Coordinates
chr4:+:16438469..16440641
Molecular Weight (calculated)
54308.3 Da
IEP (calculated)
9.719
GRAVY (calculated)
-0.475
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNETGGTMV VDLQTDPYNN IHSRHNLSYD LSEGPKPRPK FGNISKTDHD EIFPPDDPII INSNVTHQRF SSVSASTMSS GPASGEGSPC VMSPWARVSP
101: PWGADFNEDN VLETNGLIGS IVRKEGHIYS LAASGDLLYT GSDSKNIRVW KNLKEHAGFK SSSGLIKAIV IFGDRIFTGH QDGKIRIWKV SKRKPGKHKR
201: VGTLPTFKSM VKSSVNPKHF MEVRRNRNSV KTKHNDAVSS LSLDVELGLL YSSSWDTTIK VWRIADSKCL ESIHAHDDAI NSVMSGFDDL VFTGSADGTV
301: KVWKRELQGK GTKHTLAQVL LKQENAVTAL AVKSQSSIVY CGSSDGLVNY WERSKRSFTG GILKGHKSAV LCLGIAGNLL LSGSADKNIC VWRRDPSDKS
401: HQCLSVLTGH MGPVKCLAVE EERACHQGAK ASVAEGDRKW IIYSGSLDKS VKVWRVSERM ATWKEMDEPA ASSERKSSSS PHEGSGAWSS RNVEK
101: PWGADFNEDN VLETNGLIGS IVRKEGHIYS LAASGDLLYT GSDSKNIRVW KNLKEHAGFK SSSGLIKAIV IFGDRIFTGH QDGKIRIWKV SKRKPGKHKR
201: VGTLPTFKSM VKSSVNPKHF MEVRRNRNSV KTKHNDAVSS LSLDVELGLL YSSSWDTTIK VWRIADSKCL ESIHAHDDAI NSVMSGFDDL VFTGSADGTV
301: KVWKRELQGK GTKHTLAQVL LKQENAVTAL AVKSQSSIVY CGSSDGLVNY WERSKRSFTG GILKGHKSAV LCLGIAGNLL LSGSADKNIC VWRRDPSDKS
401: HQCLSVLTGH MGPVKCLAVE EERACHQGAK ASVAEGDRKW IIYSGSLDKS VKVWRVSERM ATWKEMDEPA ASSERKSSSS PHEGSGAWSS RNVEK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.