CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34380.1	CDX73678	AT3G51920.1	17360592
AT4G34380.1	CDX95314	AT3G51920.1	17360592
AT4G34380.1	CDY23174	AT3G51920.1	17360592
AT4G34380.1	CDY06478	AT4G14640.1	17360592
AT4G34380.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75426	Canola	cytosol	96.62	95.41
CDY46256	Canola	cytosol	83.51	80.78
CDX76276	Canola	cytosol	83.09	80.37
AT4G34380.1	Thale cress	cytosol	82.24	78.59
CDY45305	Canola	cytosol	80.55	77.91
CDX72479	Canola	cytosol	79.49	76.89
CDX95477	Canola	cytosol	49.89	63.44
CDY06729	Canola	cytosol	43.97	57.3
CDY70402	Canola	cytosol	43.34	56.63
VIT_03s0063g01790.t01	Wine grape	cytosol	53.28	56.63
CDX99296	Canola	cytosol	51.8	53.73
CDX92289	Canola	cytosol	51.8	53.49
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	52.43	53.22
CDY18561	Canola	cytosol	51.8	53.03
CDY48182	Canola	nucleus	50.32	53.01
CDX77053	Canola	cytosol	50.11	52.78
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	51.59	52.47
CDY16499	Canola	nucleus	51.59	52.25
CDX82320	Canola	nucleus	50.53	52.07
CDY11480	Canola	cytosol	50.95	51.83
CDX76704	Canola	cytosol	50.95	51.83
CDX77246	Canola	nucleus	51.16	51.6
CDY69149	Canola	cytosol	49.89	51.42
CDY17780	Canola	cytosol	45.67	46.85
CDY02088	Canola	cytosol, mitochondrion, nucleus	44.82	46.7
CDY23013	Canola	cytosol	44.82	46.59
CDY52834	Canola	cytosol	45.45	46.54
CDX84804	Canola	nucleus	23.89	43.46
CDY16242	Canola	plastid	33.4	38.63
CDY14665	Canola	plastid	32.77	38.08
CDY70872	Canola	nucleus	27.7	34.03
CDY21432	Canola	cytosol, nucleus, plastid	27.7	33.76
CDX78047	Canola	plastid	29.18	33.01
CDX73675	Canola	cytosol, mitochondrion, plastid	29.39	32.78
CDX84954	Canola	plastid	29.18	32.7
CDY03879	Canola	cytosol, mitochondrion	28.75	32.54
CDY23176	Canola	cytosol, plastid	28.96	32.31
CDY51591	Canola	cytosol, mitochondrion	28.33	32.06
CDY24427	Canola	plastid	27.91	31.28
CDY36134	Canola	plastid	27.7	31.04
CDY27587	Canola	plastid	28.54	31.03
KRH24543	Soybean	cytosol, nucleus	46.51	29.14

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX69050	ProteinID:CDX69050	ProteinID:CDX69050.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00130813001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE631F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC01g04030D

Coordinates

chrLK031789:+:2650964..2652385

Molecular Weight (calculated)

51969.1 Da

IEP (calculated)

9.757

GRAVY (calculated)

-0.347

Length

473 amino acids

Sequence
(BLAST)

001: MRSEAGGGTM VVDLQTDPYN NNHHRHEIIT GNVHKPRPKF GDILKADHDG IFPPVDPIII NTNLTHQRFS SVSTSTMSSG PTSGDGSPCL MSPWARVSPP
101: WAADFNEDNV LETNGLIGSI VREEGHIYSL AASGDLLYTG SDSKNIRVWK NLKDYSGFKA SSGLIKAIVI FGENRVFTGH QDGKIRIWKV SKRKPGKYKR
201: VGTLPTFKSL VKSSVNPKHY RGKNSVKTKH HDAVSSLSMD VEVGLLYSSS WDRTIKVWRV SDSKCLESIH AHEDAINSVM VGFDDLVFTG SADGTVKVWK
301: REMQVKTRHV LVQVLLKQES AVTALAVKLK SSMVYSGSSD GVVNYWQRSK KRVFVGGILK GHKSAVLCLA VAGNLLLSGS ADKNICVWRR DTSDGSHECL
401: SILTGHMGPV KCLAVEEERA CRGKGGKTST VGEGDRKWIL YSGSLDKSVK VWRVSEKMAA WREIDEPEAE SCA

Best Arabidopsis Sequence Match ( AT4G34380.1 )
(BLAST)

001: MRNETGGTMV VDLQTDPYNN IHSRHNLSYD LSEGPKPRPK FGNISKTDHD EIFPPDDPII INSNVTHQRF SSVSASTMSS GPASGEGSPC VMSPWARVSP
101: PWGADFNEDN VLETNGLIGS IVRKEGHIYS LAASGDLLYT GSDSKNIRVW KNLKEHAGFK SSSGLIKAIV IFGDRIFTGH QDGKIRIWKV SKRKPGKHKR
201: VGTLPTFKSM VKSSVNPKHF MEVRRNRNSV KTKHNDAVSS LSLDVELGLL YSSSWDTTIK VWRIADSKCL ESIHAHDDAI NSVMSGFDDL VFTGSADGTV
301: KVWKRELQGK GTKHTLAQVL LKQENAVTAL AVKSQSSIVY CGSSDGLVNY WERSKRSFTG GILKGHKSAV LCLGIAGNLL LSGSADKNIC VWRRDPSDKS
401: HQCLSVLTGH MGPVKCLAVE EERACHQGAK ASVAEGDRKW IIYSGSLDKS VKVWRVSERM ATWKEMDEPA ASSERKSSSS PHEGSGAWSS RNVEK

Arabidopsis Description

At4g34380 [Source:UniProtKB/TrEMBL;Acc:Q9SZ03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.