CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18561	Canola	cytosol	90.77	51.08
CDX99296	Canola	cytosol	83.08	47.37
CDX82320	Canola	nucleus	81.15	45.97
CDX92289	Canola	cytosol	80.38	45.63
CDY69149	Canola	cytosol	80.38	45.53
CDX95477	Canola	cytosol	62.31	43.55
CDY16499	Canola	nucleus	66.15	36.83
CDX77246	Canola	nucleus	65.38	36.25
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	46.54	26.02
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	46.54	25.97
CDY06729	Canola	cytosol	33.46	23.97
CDX69050	Canola	cytosol	43.46	23.89
CDX75426	Canola	cytosol	43.46	23.59
CDY70402	Canola	cytosol	32.31	23.2
CDX76276	Canola	cytosol	42.31	22.49
CDY46256	Canola	cytosol	42.31	22.49
CDX77053	Canola	cytosol	38.46	22.27
CDY48182	Canola	nucleus	38.46	22.27
CDY45305	Canola	cytosol	41.54	22.09
CDX72479	Canola	cytosol	41.54	22.09
CDX76704	Canola	cytosol	38.85	21.72
CDY11480	Canola	cytosol	38.85	21.72
CDY02088	Canola	cytosol, mitochondrion, nucleus	32.69	18.72
CDY23013	Canola	cytosol	32.69	18.68
CDY17780	Canola	cytosol	31.92	18.0
CDY52834	Canola	cytosol	31.54	17.75
CDY16242	Canola	plastid	23.08	14.67
CDY14665	Canola	plastid	22.31	14.25
CDY23176	Canola	cytosol, plastid	22.69	13.92
CDX73675	Canola	cytosol, mitochondrion, plastid	22.31	13.68
CDX78047	Canola	plastid	21.92	13.64
CDY03879	Canola	cytosol, mitochondrion	20.0	12.44
CDX84954	Canola	plastid	20.0	12.32
CDY51591	Canola	cytosol, mitochondrion	19.62	12.2
CDY21432	Canola	cytosol, nucleus, plastid	18.08	12.11
CDY27587	Canola	plastid	20.0	11.95
CDY24427	Canola	plastid	19.23	11.85
CDY70872	Canola	nucleus	17.31	11.69
CDY36134	Canola	plastid	18.85	11.61

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX84804	ProteinID:CDX84804	ProteinID:CDX84804.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00142103001	InterPro:IPR001680	InterPro:IPR015943	PFAM:PF00400
PANTHER:PTHR22844	PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF3AC2	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaA03g14260D

Coordinates

chrLK031838:-:1341481..1342263

Molecular Weight (calculated)

29389.2 Da

IEP (calculated)

10.046

GRAVY (calculated)

-0.823

Length

260 amino acids

Sequence
(BLAST)

001: MVIDSETSGS HHRRLTFAAF LKTDLSAHEE EEQSHGAADV INPSSNKNKN NQQRQSNAST TSGDSSPNQV RSPWNQTYSP YYTDTTTTPT MSPSPWNQTY
101: SPYYKSPWIY QTRNVDDDSD NGLIGTIVRQ EGHVYSLAAS GDLLFTGSDS KNIRVWKDLK DFAGFKSTSG LVKAIVITGD NRIFTGHQDG KIRVWRGSKR
201: RTGGYSRIGN LPTLKELLTK SVNPKNYVEV RRRKNVLKIR HYDADINKFV CVKDKHFHLV

Best Arabidopsis Sequence Match ( AT1G47610.1 )
(BLAST)

001: MPRSDLTRGY SDGDSLVGEI VREEGHIYSL AATNDLLYTG SDNNYIRVWK NLNEFSGFKS NSGLVKAIVI SREAKVFTGH QDGKIRVWKT SSKNPRVYTR
101: AGSLPALKDV LKSSVKPSNY VEVRRCRTAL WIKHSDAVSC LSLAEDQGLL YSASWDRTVK VWRIHDLKCI ESIKAHDDAV NSVTTAESLV FTGSADGTVK
201: VWKREIRGKR TAHSLFQTLL KQESAVTALV TSHMAVYSGS SDGAVNFWEM GDKKLLKHCE VFKKHRLAVL CIAAAGKLLF SGAADKKICV WRREGKVHTC
301: VSVLTGHTGP VKCLAVVEPS GGEEEDGGDG RLVLYSGSLD KSVKVWRVPR H

Arabidopsis Description

F16N3.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9SX94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.