CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36134	Canola	plastid	97.39	97.39
Bra010967.1-P	Field mustard	cytosol, plastid	97.16	97.16
CDY51591	Canola	cytosol, mitochondrion	90.05	90.91
CDY03879	Canola	cytosol, mitochondrion	89.81	90.67
CDX84954	Canola	plastid	90.52	90.52
AT1G24530.1	Thale cress	cytosol, plastid	88.15	89.0
CDY27587	Canola	plastid	89.34	86.67
VIT_01s0137g00360.t01	Wine grape	cytosol	59.0	57.64
KRH43090	Soybean	plastid	58.53	57.31
Solyc05g013880.1.1	Tomato	cytosol, plastid	54.5	54.12
PGSC0003DMT400043704	Potato	plastid	54.5	52.75
GSMUA_Achr9P07610_001	Banana	nucleus	44.08	45.7
CDY14665	Canola	plastid	43.13	44.72
CDY16242	Canola	plastid	43.13	44.5
GSMUA_Achr3P17140_001	Banana	cytosol	45.26	43.02
CDY21432	Canola	cytosol, nucleus, plastid	36.97	40.21
CDY70872	Canola	nucleus	35.07	38.44
Zm00001d025699_P001	Maize	plastid	41.0	38.27
TraesCS2D01G338900.1	Wheat	plastid	39.57	37.78
TraesCS2A01G324000.1	Wheat	plastid	39.1	37.25
CDX95477	Canola	cytosol	32.7	37.1
CDY06729	Canola	cytosol	31.75	36.91
TraesCS2B01G358100.1	Wheat	plastid	39.1	36.91
Zm00001d003272_P001	Maize	cytosol, plastid	39.34	36.81
HORVU2Hr1G083090.1	Barley	mitochondrion, plastid	39.1	36.75
CDY70402	Canola	cytosol	31.28	36.46
KXG26570	Sorghum	cytosol, plastid	39.81	35.67
GSMUA_Achr8P28630_001	Banana	cytosol	43.13	35.41
CDX78047	Canola	plastid	31.52	31.82
Os04t0481600-00	Rice	cytosol	38.63	31.53
CDX92289	Canola	cytosol	34.12	31.44
CDX82320	Canola	nucleus	33.89	31.15
CDY23176	Canola	cytosol, plastid	31.28	31.13
CDX73675	Canola	cytosol, mitochondrion, plastid	31.28	31.13
CDY16499	Canola	nucleus	34.36	31.05
CDX99296	Canola	cytosol	33.41	30.92
CDY18561	Canola	cytosol	33.41	30.52
CDY69149	Canola	cytosol	33.18	30.5
CDX77246	Canola	nucleus	33.89	30.49
CDY48182	Canola	nucleus	31.99	30.07
CDX77053	Canola	cytosol	31.52	29.62
CDX76704	Canola	cytosol	32.23	29.25
CDY11480	Canola	cytosol	32.23	29.25
CDY17780	Canola	cytosol	31.04	28.42
CDY52834	Canola	cytosol	31.04	28.36
CDY23013	Canola	cytosol	30.57	28.35
CDY02088	Canola	cytosol, mitochondrion, nucleus	30.33	28.19
CDX75426	Canola	cytosol	31.75	27.97
CDX69050	Canola	cytosol	31.28	27.91
CDX76276	Canola	cytosol	31.99	27.61
CDY46256	Canola	cytosol	31.99	27.61
CDY45305	Canola	cytosol	31.28	26.99
CDX72479	Canola	cytosol	31.28	26.99
CDX84804	Canola	nucleus	11.85	19.23

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078GGX1	EnsemblPlants:CDY24427	ProteinID:CDY24427	ProteinID:CDY24427.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00026678001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF199	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EC5DDB	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaCnng04940DBnaCnng04940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGX1]

Coordinates

chrLK032158:-:574383..575651

Molecular Weight (calculated)

46192.9 Da

IEP (calculated)

9.635

GRAVY (calculated)

-0.194

Length

422 amino acids

Sequence
(BLAST)

001: MRVISWLFDS ELSSRRRRTP KSPTHLDSTD SATSSSLSEA TGSTSLHSSL SLQTLPSVPS LQKIPSETLA VAVSHSVTSS FKLRERSLPV TCLAVNGGYI
101: FAVSGHEVSI YDRAMCAHLD TFNGQDPFSG SVKSVGFYGE KIFTAHQDGK IGVWKLTAKN GYKQLTTLPT LNDRLRRFAL PKNYVHVRRH KKRLWIEHAD
201: AVTALAVNNG FIYSVSWDKT LKIWRASDLR CQESIKAHDD AVNAVAVSTN GTVYTGSADR RIRVWAKPAD SKRYKLVATL EKHKSAVNAL ALNEDGSVLF
301: SGSCDRSILV WEREDSSSYM AVSGALRGHD KAILSLINVS DLLLSGSADR TVRIWRRGTD GCYSCLEVLS GHTKPVKSLA AVKDSELDGV VSIVSGSLDG
401: EVKCWKVSVT KPDNLVYTDL IA

Best Arabidopsis Sequence Match ( AT1G24530.1 )
(BLAST)

001: MRVISKLFDS DRRRIPKSPK HLDSGESATS SSSLSDVTTG SSSLHSSLSL QTLPSVPSLQ KIPSTTVTVS HSVTSSFKLR ERSLPVTCLA VNGGYLFAVS
101: GHEVSIYDRD MCAHLDTFNG QDPFSGTVKS VGFSGEKIFT AHQDGKIGVW KLTAKSGYKQ LTTLPTLNDR LRRFALPKNY VQVRRHKKRL WIEHADAVTA
201: LAVSDGFIYS VSWDKTLKIW RASDLRCKES IKAHDDAVNA IAVSTNGTVY TGSADRRIRV WAKPTGEKRH TLVATLEKHK SAVNALALND DGSVLFSGSC
301: DRSILVWERE DTSNYMAVRG ALRGHDKAIL SLFNVSDLLL SGSADRTVRI WRRGPDSSYS CLEVLSGHTK PVKSLAAVRE KELDDVVSII SGSLDGEVKC
401: WKVSVTKPDN SFYTNLVQ

Arabidopsis Description

F21J9.19 [Source:UniProtKB/TrEMBL;Acc:Q9FYL1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.