Factsheet for Bra010967.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36134	Canola	plastid	99.05	99.05
CDY24427	Canola	plastid	97.16	97.16
Bra012504.1-P	Field mustard	cytosol, mitochondrion	90.52	91.39
Bra032795.1-P	Field mustard	cytosol	66.59	90.94
AT1G24530.1	Thale cress	cytosol, plastid	88.63	89.47
VIT_01s0137g00360.t01	Wine grape	cytosol	58.77	57.41
KRH43090	Soybean	plastid	58.29	57.08
Solyc05g013880.1.1	Tomato	cytosol, plastid	53.55	53.18
PGSC0003DMT400043704	Potato	plastid	53.32	51.61
GSMUA_Achr9P07610_001	Banana	nucleus	43.84	45.45
Bra024637.1-P	Field mustard	plastid	43.13	44.61
GSMUA_Achr3P17140_001	Banana	cytosol	45.02	42.79
Bra000611.1-P	Field mustard	nucleus	36.49	39.59
Zm00001d025699_P001	Maize	plastid	40.52	37.83
Bra037545.1-P	Field mustard	cytosol	33.18	37.63
TraesCS2D01G338900.1	Wheat	plastid	39.1	37.33
Bra015611.1-P	Field mustard	cytosol	31.99	37.19
Zm00001d003272_P001	Maize	cytosol, plastid	39.34	36.81
TraesCS2A01G324000.1	Wheat	plastid	38.63	36.79
TraesCS2B01G358100.1	Wheat	plastid	38.63	36.47
HORVU2Hr1G083090.1	Barley	mitochondrion, plastid	38.63	36.3
KXG26570	Sorghum	cytosol, plastid	39.34	35.24
GSMUA_Achr8P28630_001	Banana	cytosol	42.89	35.21
Bra006883.1-P	Field mustard	plastid	31.99	31.84
Bra033466.1-P	Field mustard	cytosol, plastid	31.75	31.6
Bra022372.1-P	Field mustard	cytosol	33.89	31.22
Bra001728.1-P	Field mustard	nucleus	33.89	31.15
Os04t0481600-00	Rice	cytosol	38.15	31.14
Bra014189.1-P	Field mustard	nucleus	34.36	31.05
Bra034310.1-P	Field mustard	nucleus	31.99	30.07
Bra007751.1-P	Field mustard	nucleus	31.99	30.0
Bra036080.1-P	Field mustard	cytosol	31.04	28.42
Bra012903.1-P	Field mustard	cytosol	30.57	27.8
Bra011525.1-P	Field mustard	cytosol	31.52	27.77
Bra034622.1-P	Field mustard	cytosol	31.99	27.61
Bra017646.1-P	Field mustard	cytosol	31.28	26.99

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra010967	EnsemblPlants:Bra010967.1	EnsemblPlants:Bra010967.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4D3B3	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF199	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002545C52	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT1G24530 (E=8e-192) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA08:+:17315806..17317074

Molecular Weight (calculated)

46136.6 Da

IEP (calculated)

9.662

GRAVY (calculated)

-0.247

Length

422 amino acids

Sequence
(BLAST)

001: MRVISWLFDS EHSSRRRRTP KSPTHLDSTD SATSSSLSEA TGSTSLHSSL SLQTLPSVPS LQKIPAETLA VTVSHSVTSS FKLRERSLPV TCLAVNGGYV
101: FAVSGHEVSI YDRAMCAHLD NFNGQDPFSG SVKSVGFPGE KIFTAHQDGK IGVWKLTAKN GYKQLTTLPT LNDRLRRFAL PKNYVQVRRH KKRLWIEHAD
201: AVTALAVNNG FIYSVSWDKT LKIWRASDLR CQESIKAHDD AVNAVAVSTN GTVYTGSADR RIRVWAKPAD SKRYKLVATL EKHKSAVNAL ALNEDGSVLF
301: SGSCDRSILV WEREDSSSYM AVSGALRGHD KAILSLFNVS DLLLSGSADR TARIWRRGTD GCYSCLEVLS GHTKPVKSLA AVKDSELDGV VSIVSGSLDG
401: EVKCWKVSVT KPDNSVYTDL VS

Best Arabidopsis Sequence Match ( AT1G24530.1 )
(BLAST)

001: MRVISKLFDS DRRRIPKSPK HLDSGESATS SSSLSDVTTG SSSLHSSLSL QTLPSVPSLQ KIPSTTVTVS HSVTSSFKLR ERSLPVTCLA VNGGYLFAVS
101: GHEVSIYDRD MCAHLDTFNG QDPFSGTVKS VGFSGEKIFT AHQDGKIGVW KLTAKSGYKQ LTTLPTLNDR LRRFALPKNY VQVRRHKKRL WIEHADAVTA
201: LAVSDGFIYS VSWDKTLKIW RASDLRCKES IKAHDDAVNA IAVSTNGTVY TGSADRRIRV WAKPTGEKRH TLVATLEKHK SAVNALALND DGSVLFSGSC
301: DRSILVWERE DTSNYMAVRG ALRGHDKAIL SLFNVSDLLL SGSADRTVRI WRRGPDSSYS CLEVLSGHTK PVKSLAAVRE KELDDVVSII SGSLDGEVKC
401: WKVSVTKPDN SFYTNLVQ

Arabidopsis Description

F21J9.19 [Source:UniProtKB/TrEMBL;Acc:Q9FYL1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.