Factsheet for Bra007751.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11480	Canola	cytosol	100.0	96.77
CDX76704	Canola	cytosol	99.11	95.91
AT2G26490.1	Thale cress	cytosol	94.22	91.18
Bra034310.1-P	Field mustard	nucleus	90.67	90.87
VIT_18s0001g11600.t01	Wine grape	nucleus	69.78	68.86
Bra015611.1-P	Field mustard	cytosol	52.89	65.56
PGSC0003DMT400008621	Potato	mitochondrion	62.0	64.88
Solyc12g088980.1.1	Tomato	cytosol	58.22	64.53
Solyc04g079700.2.1	Tomato	cytosol	63.33	64.19
PGSC0003DMT400039941	Potato	cytosol	57.78	63.88
PGSC0003DMT400016680	Potato	cytosol	63.11	63.68
Solyc07g025140.2.1	Tomato	cytosol	61.78	62.9
KRH05757	Soybean	nucleus	63.33	61.16
KRH15278	Soybean	cytosol	48.89	60.44
Bra037545.1-P	Field mustard	cytosol	49.78	60.22
GSMUA_Achr3P30740_001	Banana	cytosol	42.44	54.57
TraesCS5B01G382700.1	Wheat	cytosol	56.89	53.89
TraesCS5D01G389000.1	Wheat	cytosol	56.89	53.89
TraesCS5A01G379200.1	Wheat	cytosol	57.11	53.88
HORVU5Hr1G093830.1	Barley	cytosol	57.11	53.65
Os03t0738700-01	Rice	plasma membrane	57.78	53.17
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	57.33	53.09
Bra034622.1-P	Field mustard	cytosol	54.0	49.69
Bra011525.1-P	Field mustard	cytosol	52.67	49.48
Bra017646.1-P	Field mustard	cytosol	53.56	49.28
Bra001728.1-P	Field mustard	nucleus	50.22	49.24
Bra022372.1-P	Field mustard	cytosol	49.78	48.91
Bra012903.1-P	Field mustard	cytosol	50.22	48.71
Bra036080.1-P	Field mustard	cytosol	49.56	48.37
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	39.78	47.99
Bra014189.1-P	Field mustard	nucleus	49.78	47.97
GSMUA_Achr6P20880_001	Banana	cytosol	40.44	46.43
GSMUA_AchrUn_...	Banana	nucleus	38.22	43.22
Bra032795.1-P	Field mustard	cytosol	28.67	41.75
Bra024637.1-P	Field mustard	plastid	35.33	38.97
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	42.22	38.15
Bra006883.1-P	Field mustard	plastid	35.56	37.74
Bra033466.1-P	Field mustard	cytosol, plastid	34.89	37.03
Bra000611.1-P	Field mustard	nucleus	31.78	36.76
Bra012504.1-P	Field mustard	cytosol, mitochondrion	30.22	32.54
Bra010967.1-P	Field mustard	cytosol, plastid	30.0	31.99
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	45.33	31.88

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra007751	EnsemblPlants:Bra007751.1	EnsemblPlants:Bra007751.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4CU57	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF128	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002542BB6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT2G26490 (E=9e-242) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA09:-:30711432..30712784

Molecular Weight (calculated)

49616.9 Da

IEP (calculated)

8.990

GRAVY (calculated)

-0.406

Length

450 amino acids

Sequence
(BLAST)

001: MMHSDPNLAS TTTNQTEEEY GVRNSSASAV GTGMYDRMSC EGSPMMMSPW NQANPFAQTQ WPNVEENLPQ NGLIGSLVRE EGHIYSLAAT KDLLYTGSDS
101: KNIRVWKNLK EFSAFKCNSG LVKAIVISGE KIFTGHQDGK IRVWKVSPKN QSLHKRSGTL PTLKDIFKAS LKPRNYVEVK KNRTALWIKH ADAISCLSLN
201: DEQGLLYSAS WDRTIKVWRI SDSKCLESIP AHDDAVNSVV STTEAIVFSG SADGTVKAWK REQKGKYTKH TLMQTLTKQE SAVTALAVSK NGAAVYFGSS
301: DGLVNFWERE KQLNYGGVLK GHKLAVLCLE VAGSLVFSGS ADKTICVWKR DANIHTCLSV LTGHTGPVKC LAVEADREVS EHKDKKWIVY SGSLDKSVKV
401: WGVSESFIDM NQIGMMHQQQ QQQVISHSEP FMSEGSVSSS TGGASSHRRQ

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.