Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039941 | Potato | cytosol | 97.29 | 97.05 |
| Solyc07g025140.2.1 | Tomato | cytosol | 72.41 | 66.52 |
| Solyc04g079700.2.1 | Tomato | cytosol | 72.66 | 66.44 |
| Bra034310.1-P | Field mustard | nucleus | 64.53 | 58.35 |
| CDY48182 | Canola | nucleus | 64.53 | 58.35 |
| Bra007751.1-P | Field mustard | nucleus | 64.53 | 58.22 |
| VIT_18s0001g11600.t01 | Wine grape | nucleus | 65.27 | 58.11 |
| CDX77053 | Canola | cytosol | 63.79 | 57.68 |
| CDX76704 | Canola | cytosol | 64.53 | 56.34 |
| CDY11480 | Canola | cytosol | 64.53 | 56.34 |
| KRH15278 | Soybean | cytosol | 50.0 | 55.77 |
| AT2G26490.1 | Thale cress | cytosol | 63.55 | 55.48 |
| KRH05757 | Soybean | nucleus | 61.58 | 53.65 |
| Solyc03g044830.2.1 | Tomato | nucleus | 56.65 | 50.33 |
| GSMUA_Achr3P30740_001 | Banana | cytosol | 43.35 | 50.29 |
| Solyc02g090150.1.1 | Tomato | nucleus | 54.93 | 49.34 |
| Solyc01g109120.2.1 | Tomato | cytosol, mitochondrion | 54.68 | 47.74 |
| Os03t0738700-01 | Rice | plasma membrane | 55.91 | 46.42 |
| TraesCS5D01G389000.1 | Wheat | cytosol | 53.94 | 46.11 |
| TraesCS5B01G382700.1 | Wheat | cytosol | 53.94 | 46.11 |
| TraesCS5A01G379200.1 | Wheat | cytosol | 53.94 | 45.91 |
| HORVU5Hr1G093830.1 | Barley | cytosol | 53.94 | 45.72 |
| EER93490 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 54.68 | 45.68 |
| GSMUA_Achr4P10690_001 | Banana | cytosol, endoplasmic reticulum, plastid | 39.66 | 43.16 |
| GSMUA_Achr6P20880_001 | Banana | cytosol | 41.13 | 42.6 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.66 | 40.45 |
| Solyc01g068250.2.1 | Tomato | cytosol | 35.22 | 34.38 |
| Solyc05g006340.2.1 | Tomato | cytosol | 34.98 | 34.22 |
| GSMUA_Achr4P07470_001 | Banana | endoplasmic reticulum, plasma membrane | 40.15 | 32.73 |
| Solyc04g005020.2.1 | Tomato | plastid | 33.74 | 31.93 |
| Solyc03g111780.1.1 | Tomato | cytosol | 29.8 | 30.17 |
| Solyc05g013880.1.1 | Tomato | cytosol, plastid | 31.28 | 29.88 |
| Solyc03g113850.1.1 | Tomato | cytosol, plastid | 34.48 | 29.54 |
| Solyc12g044320.1.1 | Tomato | cytosol, plastid | 30.3 | 27.15 |
| GSMUA_Achr4P03080_001 | Banana | mitochondrion, nucleus, peroxisome, plasma membrane | 42.12 | 26.72 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:K4DGW9 | PFAM:PF00400 | PRINTS:PR00320 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22844 | PANTHER:PTHR22844:SF128 | SMART:SM00320 | SUPFAM:SSF50978 |
| EnsemblPlantsGene:Solyc12g088980.1 | EnsemblPlants:Solyc12g088980.1.1 | UniParc:UPI00027695C3 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:64148515..64150825
Molecular Weight (calculated)
45082.2 Da
IEP (calculated)
8.173
GRAVY (calculated)
-0.393
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTTNNDDE FNVQKSKFSE YDRVSCENSP MNMSPWNQSC NLNATNDDDN DDVTKNNRKI CLIGSLVREE GHIYSLATKN DLLYTGSDSK NIRVWKDMKE
101: FSAFKSNSGL VKAIIISGDK IFTGHQDGKV RVWKVQPNNP SSFKPAGTLP TFFDIFKASI RPSNYFMSAK HNKASIWIKH WDAISCLSMD HNHGLLYSAS
201: WDRTFKVWRA DSSKCLESVK AHEDAVNSVV ASADGVVYTG SADGTVKIWQ REFTPKTIRH VLVHTLLNQE CAVTALAVNK SGSVVYCGSS DGVVNFWEKE
301: KKSWTHGGVL KGHKLAVLCL ESAGNLVFSG SADKNICVWR KEGCVHTCLS MLTGHNGPVK CLAVEQDKES TTSDKKWVLY SGSLDKSVKV WSVSEMAPIM
401: HNGEVQ
101: FSAFKSNSGL VKAIIISGDK IFTGHQDGKV RVWKVQPNNP SSFKPAGTLP TFFDIFKASI RPSNYFMSAK HNKASIWIKH WDAISCLSMD HNHGLLYSAS
201: WDRTFKVWRA DSSKCLESVK AHEDAVNSVV ASADGVVYTG SADGTVKIWQ REFTPKTIRH VLVHTLLNQE CAVTALAVNK SGSVVYCGSS DGVVNFWEKE
301: KKSWTHGGVL KGHKLAVLCL ESAGNLVFSG SADKNICVWR KEGCVHTCLS MLTGHNGPVK CLAVEQDKES TTSDKKWVLY SGSLDKSVKV WSVSEMAPIM
401: HNGEVQ
001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH
Arabidopsis Description
JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.