CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034310.1-P	Field mustard	nucleus	100.0	100.0
CDX77053	Canola	cytosol	98.0	98.0
AT2G26490.1	Thale cress	cytosol	91.31	88.17
CDX76704	Canola	cytosol	91.09	87.96
CDY11480	Canola	cytosol	90.87	87.74
VIT_18s0001g11600.t01	Wine grape	nucleus	70.38	69.3
CDY06729	Canola	cytosol	53.45	66.12
CDY70402	Canola	cytosol	52.56	65.19
PGSC0003DMT400008621	Potato	mitochondrion	62.36	65.12
Solyc04g079700.2.1	Tomato	cytosol	63.92	64.64
Solyc12g088980.1.1	Tomato	cytosol	58.35	64.53
PGSC0003DMT400039941	Potato	cytosol	58.35	64.37
PGSC0003DMT400016680	Potato	cytosol	63.47	63.9
Solyc07g025140.2.1	Tomato	cytosol	62.36	63.35
KRH15278	Soybean	cytosol	50.33	62.09
KRH05757	Soybean	nucleus	64.37	62.02
CDX95477	Canola	cytosol	50.33	60.75
GSMUA_Achr3P30740_001	Banana	cytosol	42.98	55.14
TraesCS5D01G389000.1	Wheat	cytosol	57.68	54.53
TraesCS5B01G382700.1	Wheat	cytosol	57.68	54.53
TraesCS5A01G379200.1	Wheat	cytosol	57.91	54.51
HORVU5Hr1G093830.1	Barley	cytosol	58.13	54.49
Os03t0738700-01	Rice	plasma membrane	58.57	53.78
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	58.13	53.7
CDY18561	Canola	cytosol	52.56	51.08
CDX99296	Canola	cytosol	51.45	50.66
CDX82320	Canola	nucleus	51.67	50.54
CDX69050	Canola	cytosol	53.01	50.32
CDY46256	Canola	cytosol	54.79	50.31
CDX72479	Canola	cytosol	54.57	50.1
CDX92289	Canola	cytosol	51.0	50.0
CDY45305	Canola	cytosol	54.34	49.9
CDX75426	Canola	cytosol	53.23	49.9
CDY02088	Canola	cytosol, mitochondrion, nucleus	50.33	49.78
CDX76276	Canola	cytosol	54.12	49.69
CDY69149	Canola	cytosol	50.78	49.67
CDY23013	Canola	cytosol	50.33	49.67
CDX77246	Canola	nucleus	51.22	49.04
CDY16499	Canola	nucleus	51.0	49.04
CDY17780	Canola	cytosol	49.89	48.59
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	40.31	48.53
CDY52834	Canola	cytosol	49.67	48.27
GSMUA_Achr6P20880_001	Banana	cytosol	40.09	45.92
GSMUA_AchrUn_...	Banana	nucleus	38.31	43.22
CDY14665	Canola	plastid	34.97	38.57
CDX84804	Canola	nucleus	22.27	38.46
CDY16242	Canola	plastid	34.97	38.39
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	42.32	38.15
CDX78047	Canola	plastid	35.41	38.04
CDX73675	Canola	cytosol, mitochondrion, plastid	35.63	37.74
CDY23176	Canola	cytosol, plastid	34.74	36.79
CDY21432	Canola	cytosol, nucleus, plastid	31.63	36.6
CDY70872	Canola	nucleus	30.51	35.58
CDX84954	Canola	plastid	31.63	33.65
CDY03879	Canola	cytosol, mitochondrion	30.73	33.01
CDY27587	Canola	plastid	31.63	32.64
CDY51591	Canola	cytosol, mitochondrion	30.29	32.54
CDY36134	Canola	plastid	30.51	32.46
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	46.1	32.34
CDY24427	Canola	plastid	30.07	31.99

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078IDM5	EnsemblPlants:CDY48182	ProteinID:CDY48182	ProteinID:CDY48182.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00088997001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF128	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00025452BF	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaA04g15460DBnaA04g15460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDM5]

Coordinates

chrLK032758:+:55262..56611

Molecular Weight (calculated)

49210.1 Da

IEP (calculated)

7.618

GRAVY (calculated)

-0.389

Length

449 amino acids

Sequence
(BLAST)

001: MMHSDPNLSS TMTDQTEDEY GLRNSSASAV GTGMYGRMSC EGSPVMMSPW NQASPFTQTE WSNVDENLPQ NGLIGSLVRE EGHIYSLAAT KDLLYTGSDS
101: KNIRVWKNLK EFSAFKCNSG LVKAIVISGE KIFTGHQDGK IRVWKVSPKN QSSHKRSGTL PTLKDIFKAS LKPSNYVEVK KNRTALWIKH ADAVSCLSLN
201: EEQGLLYSAS WDRTIKVWRI SDSKCLESIP AHDDAVNSVV STTEAIVFSG SADGTVKAWK REQQGKHTKH TLMQTLTKQE TAITALAVNK NGTAVYFGSS
301: DGLVNFWERD EKQLNYGGVL KGHKLAVLCL EVAGGLVFSG SADKTICVWK RDGNIHTCLS VLTGHTGPVK CLAVEENLEV SEQKDHKWIV YSGSLDKSVK
401: VWGVSESFID MNNMGTMQQE QHVISHSEVV MSDGSFSSST GGASSHQRG

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.