Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16499 | Canola | nucleus | 95.31 | 95.72 |
| AT1G49450.1 | Thale cress | nucleus | 85.71 | 85.35 |
| CDX95477 | Canola | cytosol | 64.61 | 81.45 |
| CDY18561 | Canola | cytosol | 72.92 | 74.03 |
| CDX99296 | Canola | cytosol | 71.43 | 73.46 |
| CDX82320 | Canola | nucleus | 71.43 | 72.98 |
| CDX92289 | Canola | cytosol | 71.0 | 72.71 |
| CDY69149 | Canola | cytosol | 70.15 | 71.68 |
| CDX84804 | Canola | nucleus | 36.25 | 65.38 |
| CDY06729 | Canola | cytosol | 47.12 | 60.88 |
| CDY70402 | Canola | cytosol | 46.27 | 59.94 |
| PGSC0003DMT400066737 | Potato | cytosol, mitochondrion | 52.45 | 52.79 |
| Solyc01g109120.2.1 | Tomato | cytosol, mitochondrion | 51.81 | 52.26 |
| CDY48182 | Canola | nucleus | 49.04 | 51.22 |
| CDX77053 | Canola | cytosol | 49.04 | 51.22 |
| CDX69050 | Canola | cytosol | 51.6 | 51.16 |
| CDX75426 | Canola | cytosol | 52.24 | 51.15 |
| CDY46256 | Canola | cytosol | 50.96 | 48.88 |
| CDY45305 | Canola | cytosol | 50.75 | 48.67 |
| CDY11480 | Canola | cytosol | 48.19 | 48.6 |
| CDX76704 | Canola | cytosol | 48.19 | 48.6 |
| CDX72479 | Canola | cytosol | 50.32 | 48.26 |
| CDX76276 | Canola | cytosol | 50.32 | 48.26 |
| CDY02088 | Canola | cytosol, mitochondrion, nucleus | 43.71 | 45.15 |
| CDY17780 | Canola | cytosol | 44.35 | 45.12 |
| CDY23013 | Canola | cytosol | 43.71 | 45.05 |
| CDY52834 | Canola | cytosol | 44.14 | 44.81 |
| CDY16242 | Canola | plastid | 33.05 | 37.9 |
| CDY14665 | Canola | plastid | 32.62 | 37.59 |
| CDX78047 | Canola | plastid | 32.84 | 36.84 |
| CDX73675 | Canola | cytosol, mitochondrion, plastid | 33.05 | 36.56 |
| CDY23176 | Canola | cytosol, plastid | 32.41 | 35.85 |
| CDX84954 | Canola | plastid | 31.56 | 35.07 |
| CDY03879 | Canola | cytosol, mitochondrion | 30.7 | 34.45 |
| CDY21432 | Canola | cytosol, nucleus, plastid | 28.36 | 34.28 |
| CDY51591 | Canola | cytosol, mitochondrion | 30.28 | 33.97 |
| CDY24427 | Canola | plastid | 30.49 | 33.89 |
| CDY36134 | Canola | plastid | 30.28 | 33.65 |
| CDY27587 | Canola | plastid | 31.13 | 33.56 |
| CDY70872 | Canola | nucleus | 27.29 | 33.25 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EnsemblPlants:CDX77246 | ProteinID:CDX77246 | ProteinID:CDX77246.1 | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00127930001 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22844 |
| PANTHER:PTHR22844:SF145 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EE86F6 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
BnaC08g02910D
Coordinates
chrLK031810:-:187217..188626
Molecular Weight (calculated)
52069.4 Da
IEP (calculated)
6.828
GRAVY (calculated)
-0.578
Length
469 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIQDNHSRN DPYRRLTFAS FLKSDSLDAG DEAYHTDGDH NHSDNKDAIS TNSDSQRPSN ASTSDSSSSP IYPLSPWNQT YYPPNDNTTA FSSTNQSSWN
101: QSCSPYHKSP WIYQTRNSDF EDDPDNGLVG TIVRQEGHVY SLAAAGDLLF TGSDSKNIRV WKDLKDFSGF KSTSGFVKAI VITGDNRVFT GHQDGKIRVW
201: RGSKGNPERY SRVGSLPTLK EFLTKSVNPK NYVETRRKKN KLKIRHFDAV SCLTVNEDLG LLYSGSWDKT LKVWRLSDSK CLESIEAHDD AVNTVVAGFD
301: DLVFTGSADG TLKVWKRELQ GRETKHVLVH VLMKQESAVT ALAVNLIDAV IYCGSSDGSV NFWERKKYLT HGGTIHGHRM AVLCLTSAGS LLLSGGADKN
401: ICVWRRNGDG SHTCLSVLMD HDGPVKCLTA VEEAEDEVND GDKADQRWIV YSGSLDKSVK VWRVTDYAS
101: QSCSPYHKSP WIYQTRNSDF EDDPDNGLVG TIVRQEGHVY SLAAAGDLLF TGSDSKNIRV WKDLKDFSGF KSTSGFVKAI VITGDNRVFT GHQDGKIRVW
201: RGSKGNPERY SRVGSLPTLK EFLTKSVNPK NYVETRRKKN KLKIRHFDAV SCLTVNEDLG LLYSGSWDKT LKVWRLSDSK CLESIEAHDD AVNTVVAGFD
301: DLVFTGSADG TLKVWKRELQ GRETKHVLVH VLMKQESAVT ALAVNLIDAV IYCGSSDGSV NFWERKKYLT HGGTIHGHRM AVLCLTSAGS LLLSGGADKN
401: ICVWRRNGDG SHTCLSVLMD HDGPVKCLTA VEEAEDEVND GDKADQRWIV YSGSLDKSVK VWRVTDYAS
001: MAIEENRSHN DYLRRMTFAA FLKSGSLAAE EETYHSDGDH HNQSTFSSNS DSQRPSNASS ASSDSSSPIY PLSPWNQTYY PSNDNTTSFS SVTQSPWNQT
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S
Arabidopsis Description
F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.