CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036080.1-P	Field mustard	cytosol	98.92	98.92
CDY52834	Canola	cytosol	98.48	98.27
CDY02088	Canola	cytosol, mitochondrion, nucleus	78.52	79.74
CDY23013	Canola	cytosol	78.09	79.12
AT3G50390.1	Thale cress	cytosol	80.26	78.89
CDY06729	Canola	cytosol	44.69	56.75
CDY70402	Canola	cytosol	44.03	56.08
VIT_07s0255g00110.t01	Wine grape	nucleus	60.09	55.62
CDX95477	Canola	cytosol	43.82	54.3
Solyc02g090150.1.1	Tomato	nucleus	53.15	54.2
PGSC0003DMT400026153	Potato	nucleus	54.01	54.13
Solyc03g044830.2.1	Tomato	nucleus	52.28	52.74
PGSC0003DMT400059001	Potato	extracellular	52.28	52.51
KRH28540	Soybean	nucleus	51.41	51.75
KRH76925	Soybean	nucleus	51.41	51.52
CDY48182	Canola	nucleus	48.59	49.89
CDX77053	Canola	cytosol	48.37	49.67
CDX76704	Canola	cytosol	48.81	48.39
CDY11480	Canola	cytosol	48.59	48.17
CDX69050	Canola	cytosol	46.85	45.67
CDX92289	Canola	cytosol	45.12	45.41
CDX99296	Canola	cytosol	44.9	45.39
CDX75426	Canola	cytosol	46.85	45.09
CDY18561	Canola	cytosol	44.9	44.81
CDY46256	Canola	cytosol	47.29	44.58
CDY16499	Canola	nucleus	45.12	44.54
CDY69149	Canola	cytosol	44.25	44.44
CDY45305	Canola	cytosol	47.07	44.38
CDX77246	Canola	nucleus	45.12	44.35
CDX82320	Canola	nucleus	44.03	44.23
CDX76276	Canola	cytosol	46.85	44.17
CDX72479	Canola	cytosol	46.2	43.56
CDY14665	Canola	plastid	32.1	36.36
CDY16242	Canola	plastid	31.89	35.94
CDX78047	Canola	plastid	31.89	35.17
CDX73675	Canola	cytosol, mitochondrion, plastid	32.1	34.91
CDY21432	Canola	cytosol, nucleus, plastid	29.28	34.79
CDY23176	Canola	cytosol, plastid	31.89	34.67
CDY70872	Canola	nucleus	28.42	34.03
CDY51591	Canola	cytosol, mitochondrion	29.5	32.54
CDY03879	Canola	cytosol, mitochondrion	29.28	32.3
CDX84954	Canola	plastid	29.5	32.23
CDX84804	Canola	nucleus	18.0	31.92
CDY36134	Canola	plastid	28.63	31.28
CDY24427	Canola	plastid	28.42	31.04
CDY27587	Canola	plastid	29.07	30.8

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078FTB0	EnsemblPlants:CDY17780	ProteinID:CDY17780	ProteinID:CDY17780.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00002038001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF270	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE8D40	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaC08g21880DBnaC08g21880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTB0]

Coordinates

chrLK032077:+:543724..545109

Molecular Weight (calculated)

50512.6 Da

IEP (calculated)

9.170

GRAVY (calculated)

-0.377

Length

461 amino acids

Sequence
(BLAST)

001: MPSSKDTNSQ KFTKLKKVET DPDPDLYDIT YVDVTPSESC SSPLSKSPWS VQVDPNVIEP PRSSASKSTA SHAKEPKNYS PNILMGSLVR EEGHIYSLAT
101: SGDLLFTGSD SKNIRVWKNH IEFSTFKSNS GLVKAIVLAA DKIFTGHQDG KIRVWKVSSK DSSVFRRVGT MPLIRDYIKN SIASSSYLGF MRRNRTSTSA
201: QGFRHLDAIS CLALSEDRRL LYSGSWDKTF KVWRVSDLRC LESVNAHDDA VNAVVAGFDG LVFSGSADGS VKVWRREDQA KETKHFFSET LLKQDCAVTA
301: IAVDQSGMLI YCGSSDGTVN FWERDDNMKN GGILKGHKLA VLCLFAAGNL LFSGSADLGI RVWRRPERGG GGGRGGEHAC VSVLTGHAGP VKCLAVERDQ
401: ESVSGERRWI VYSGSLDRSV KMWRVSENSP PLEFMTDSSG GSSRLTVAPS FSAQGRISHN K

Best Arabidopsis Sequence Match ( AT3G50390.1 )
(BLAST)

001: MSSMHKKGTS RDVNSQAFTK LTKVETIPDP DIYDITYVDI SPSEGSSSPL SKSPWSVQVD PSAVDSPYHS VKVTTDTTKE KSTNHSPNIL LGSLVREEGH
101: IYSLATSGDL LYTGSDSKNI RVWKNHVEFS SFKSNSGLVK AIVLAGDKIF TGHQDGKIRV WKAASKESNV HRRVGTMPNL LDYIRNSIVP SSYFNFTRRN
201: RSSAALGFRH LDAISCLALS EDKRLLYSGS WDKTFKVWRV SDLRCVESVN AHEDAVNAVV SGFDGLVFTG SADGTVKVWR REDQAKDTKH FFSETLLKQD
301: CAVTAIAVDQ SATLVYCGSS DGTVNFWERE NNMKNGGVLK GHKLAVLCLV AAGNLMFSGS ADLGIRVWRR PEGGGEHVCL SVLTGHAGPV KCLAVERDQE
401: SVSGERRWIV YSGSLDRSVK MWRVSESSPP MVNQEFKLPD QFGGGGGGGP AELTVAPSFS AQGRISPQK

Arabidopsis Description

At3g50390 [Source:UniProtKB/TrEMBL;Acc:A2RVN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.