CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033466.1-P	Field mustard	cytosol, plastid	97.64	97.64
CDX73675	Canola	cytosol, mitochondrion, plastid	90.8	90.8
CDX78047	Canola	plastid	89.39	90.67
AT3G51930.1	Thale cress	cytosol, plastid	88.44	90.36
VIT_13s0019g01680.t01	Wine grape	plastid	62.5	66.75
KRH39863	Soybean	cytosol, plastid	64.39	65.62
PGSC0003DMT400017340	Potato	plastid	63.44	65.45
Solyc01g068250.2.1	Tomato	cytosol	63.44	64.66
GSMUA_Achr11P...	Banana	cytosol	53.77	61.29
Os01t0946100-02	Rice	cytosol, plastid	53.3	52.44
TraesCS3A01G485100.1	Wheat	plastid	51.42	52.4
TraesCS3D01G480400.1	Wheat	plastid	51.18	50.7
TraesCS3B01G532800.1	Wheat	cytosol, plastid	51.65	50.69
HORVU3Hr1G106030.1	Barley	plastid	52.12	50.69
KXG34097	Sorghum	plastid	51.89	50.23
Zm00001d042132_P001	Maize	plastid	44.81	47.26
CDY06729	Canola	cytosol	33.49	39.12
CDX95477	Canola	cytosol	34.2	38.98
CDY70402	Canola	cytosol	33.25	38.95
CDY14665	Canola	plastid	33.96	35.38
CDY21432	Canola	cytosol, nucleus, plastid	32.08	35.05
CDY16242	Canola	plastid	33.73	34.96
CDY48182	Canola	nucleus	36.79	34.74
CDX77053	Canola	cytosol	36.56	34.52
CDY11480	Canola	cytosol	37.03	33.76
CDX76704	Canola	cytosol	37.03	33.76
CDX99296	Canola	cytosol	36.08	33.55
CDY70872	Canola	nucleus	30.42	33.51
CDX92289	Canola	cytosol	36.08	33.41
CDY03879	Canola	cytosol, mitochondrion	32.08	32.54
CDX84954	Canola	plastid	32.31	32.46
CDX77246	Canola	nucleus	35.85	32.41
CDY16499	Canola	nucleus	35.61	32.33
CDX82320	Canola	nucleus	34.67	32.03
CDY17780	Canola	cytosol	34.67	31.89
CDY18561	Canola	cytosol	34.67	31.82
CDY51591	Canola	cytosol, mitochondrion	31.37	31.82
CDY69149	Canola	cytosol	34.43	31.81
CDY36134	Canola	plastid	31.6	31.75
CDY52834	Canola	cytosol	34.43	31.6
CDY24427	Canola	plastid	31.13	31.28
CDY02088	Canola	cytosol, mitochondrion, nucleus	33.49	31.28
CDY27587	Canola	plastid	32.08	31.26
CDY23013	Canola	cytosol	33.49	31.21
CDX69050	Canola	cytosol	32.31	28.96
CDX75426	Canola	cytosol	32.55	28.81
CDX72479	Canola	cytosol	32.78	28.43
CDY45305	Canola	cytosol	32.55	28.22
CDY46256	Canola	cytosol	32.08	27.81
CDX76276	Canola	cytosol	32.08	27.81
CDX84804	Canola	nucleus	13.92	22.69

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078GCR3	EnsemblPlants:CDY23176	ProteinID:CDY23176	ProteinID:CDY23176.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00021710001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF223
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE44CC	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

BnaA04g05830DBnaA04g05830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCR3]

Coordinates

chrLK032141:+:157033..158307

Molecular Weight (calculated)

46025.0 Da

IEP (calculated)

9.573

GRAVY (calculated)

-0.274

Length

424 amino acids

Sequence
(BLAST)

001: MVRSIQEGDL MTSSPSSSST TTTNGTDSDG SLSPSSSSKS FVLTTLPPLI TAAYKPLAVL SAHVGSVSSL ALCGEFLLSA SQGKDIIVWQ QPDLKIFAKF
101: GQGDGSVKAL VSVGSKVFTA HQDSRIRVWK VSRRSSENAF RLVDTLPTTK DYLGKFMKQS NYVQTRRNHK RLWIEHADSI SCLAVHAGII YSGSWDKTLK
201: VWRLSDLKCL ESIKAHDDAI NGLFAGDGRV YSASADGKIK IWGKEKKKQT GSSLSSHSSS SSCSHVLKAT LEGRAEVSVN SVVVSGDGKW VYGGGSDGFV
301: MGWEKREKGG DFEEWKLGFE MRGHKMAVLC MCLVGEMVCS GSADKSIGLW KREGSGKLCK VGVIQGHEGP VKCLQASPNN VGAGFMLYSG GLDKSIRVWW
401: VPKQDNLEEE KKKTSFKTLL MQQE

Best Arabidopsis Sequence Match ( AT3G51930.1 )
(BLAST)

001: MVRSIQEGVL MSSSSSSTTS NSNDSDGSLS PSASTKSFVL NTLRPPITGA YKPLAVLSAH VGSVSSLALC GEFLLSASQG KDIIVWQQPD LKIFAKFGQG
101: DGSVKALVSV GSKVFTAHQD SRIRVWKVSR RNSENAFRLV DTLPTTKDYL GKFMKQSNYV QTRRNHKRLW IEHADSISCL AVHAGIIYSG SWDKTLKVWR
201: LSDLKCLESI KAHDDAINGL VAGDGRVYSA SADGKVKIWG KEKRKQIEST SSSSSSLHVL KATLEGRAEV SVNSVVVSGD GNWVYGGGSD GFVIGWEKKE
301: KEGDFEEWRL GFETRGHNMA VLCMCVVGEM VCSGSADKSI GLWRREVTGM LCKFGVIHGH EGPVKCLQAS PNNVGAGFML YSGGLDKSLR VWWVPKQDNL
401: EEKKSSFKTL LTQKE

Arabidopsis Description

At3g51930 [Source:UniProtKB/TrEMBL;Acc:Q9SV11]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.