CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012504.1-P	Field mustard	cytosol, mitochondrion	99.76	99.76
CDY03879	Canola	cytosol, mitochondrion	97.13	97.13
CDX84954	Canola	plastid	92.34	91.47
CDY36134	Canola	plastid	91.87	91.0
CDY24427	Canola	plastid	90.91	90.05
AT1G24530.1	Thale cress	cytosol, plastid	89.23	89.23
CDY27587	Canola	plastid	90.43	86.9
VIT_01s0137g00360.t01	Wine grape	cytosol	60.29	58.33
KRH43090	Soybean	plastid	59.33	57.54
Solyc05g013880.1.1	Tomato	cytosol, plastid	55.02	54.12
PGSC0003DMT400043704	Potato	plastid	54.78	52.52
GSMUA_Achr9P07610_001	Banana	nucleus	45.69	46.93
CDY14665	Canola	plastid	43.78	44.96
CDY16242	Canola	plastid	43.78	44.74
GSMUA_Achr3P17140_001	Banana	cytosol	47.37	44.59
CDY21432	Canola	cytosol, nucleus, plastid	37.8	40.72
CDY70872	Canola	nucleus	35.89	38.96
Zm00001d025699_P001	Maize	plastid	40.91	37.83
CDX95477	Canola	cytosol	33.25	37.37
Zm00001d003272_P001	Maize	cytosol, plastid	39.95	37.03
TraesCS2D01G338900.1	Wheat	plastid	39.0	36.88
CDY06729	Canola	cytosol	31.82	36.64
GSMUA_Achr8P28630_001	Banana	cytosol	44.98	36.58
TraesCS2A01G324000.1	Wheat	plastid	38.76	36.57
TraesCS2B01G358100.1	Wheat	plastid	38.76	36.24
HORVU2Hr1G083090.1	Barley	mitochondrion, plastid	38.76	36.08
CDY70402	Canola	cytosol	31.1	35.91
KXG26570	Sorghum	cytosol, plastid	40.19	35.67
CDX78047	Canola	plastid	32.54	32.54
CDX73675	Canola	cytosol, mitochondrion, plastid	32.3	31.84
CDX92289	Canola	cytosol	34.69	31.66
Os04t0481600-00	Rice	cytosol	39.0	31.53
CDY23176	Canola	cytosol, plastid	31.82	31.37
CDX82320	Canola	nucleus	34.21	31.15
CDX99296	Canola	cytosol	33.73	30.92
CDY16499	Canola	nucleus	34.45	30.84
CDY69149	Canola	cytosol	33.73	30.72
CDY18561	Canola	cytosol	33.73	30.52
CDY48182	Canola	nucleus	32.54	30.29
CDX77246	Canola	nucleus	33.97	30.28
CDX77053	Canola	cytosol	32.3	30.07
CDY17780	Canola	cytosol	32.54	29.5
CDX76704	Canola	cytosol	32.78	29.46
CDY11480	Canola	cytosol	32.78	29.46
CDY52834	Canola	cytosol	32.54	29.44
CDY23013	Canola	cytosol	31.58	29.01
CDY02088	Canola	cytosol, mitochondrion, nucleus	31.34	28.85
CDX75426	Canola	cytosol	32.54	28.39
CDX69050	Canola	cytosol	32.06	28.33
CDY46256	Canola	cytosol	32.54	27.81
CDX76276	Canola	cytosol	32.54	27.81
CDY45305	Canola	cytosol	32.3	27.61
CDX72479	Canola	cytosol	32.3	27.61
CDX84804	Canola	nucleus	12.2	19.62

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078INR5	EnsemblPlants:CDY51591	ProteinID:CDY51591	ProteinID:CDY51591.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00003796001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF199	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE15B9	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaA07g36760DBnaA07g36760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INR5]

Coordinates

chrLK033009:-:48578..49834

Molecular Weight (calculated)

45732.4 Da

IEP (calculated)

9.951

GRAVY (calculated)

-0.214

Length

418 amino acids

Sequence
(BLAST)

001: MRVMSWLDSS RRRRVQKSLK HLDSDDSATS SSLSEATGLS SLHSSLSLQT LPSVPSLQKI PSDTHAVTVS HSVTSSFKLR ERSLPVTCLA VNGGYLFAVS
101: GHEVSIYDRA MCAHLDTFNG HDPFSGSVKS VGFSGEKIFT AHQDGKIGVW KLTAKSGYKQ LTTLPTLNDR LRRFALPKNY VQVRRHKKRL WIEHADAVTA
201: LAVNNGFIYS VSWDKTLKIW RASDLRCKES VKAHDDAVNA VAVSANGTVY TGSADRRIRV WAKPDDSKRH ELVATLEKHK SAVNALALND DGSVLFSGSC
301: DRSILVWERV DSSNYMAVSG ALRGHDKAIL SLFNVSDLLL SGSADRTVRI WRRGTDGCYS CLEVLSGHTK PVKSLAAVRD LESGGVVSIV SGSLDGEVKC
401: WKVSVSKPDN SIYKSLVL

Best Arabidopsis Sequence Match ( AT1G24130.1 )
(BLAST)

001: MGLLPCSCPL PCNETRSECE TKSTHHQSES STSSSLLSQP SLPLVPSLSF QHQSSSVDHH CLATLKDKSS YVSSLAVSDK LLYTGSSNSE IRVWPREPPF
101: SPEYSTGDDR NVVANGNGGV KSLVILGDKL ISAHQDHKIR VWKIIDESNR RGQKYKCVAT LPTMNDRFKT LFSSKSYVEV RRHKKCTWVH HVDAVSSLAL
201: SQDGSLLYSA SWDRSFKIWR TSDFKCLDSI EKAHDDAINA IVVSKDGFVY TGSADKKIKV WNKKDKKHSL VATLTKHLSA VNALAISEDG KVLYSGACDR
301: SILVWERLIN GDDEELHMSV VGALRGHRKA IMCLAVASDL VLSGSADKSL RVWRRGLMEK EGYSCLAVLE GHTKPVKSLA VSVSDSDSNS DYSCMVYSGS
401: LDLSLKVWNL RVSSI

Arabidopsis Description

F3I6.5 protein [Source:UniProtKB/TrEMBL;Acc:O48679]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.