CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000611.1-P	Field mustard	nucleus	93.51	92.55
CDY21432	Canola	cytosol, nucleus, plastid	91.17	90.46
AT5G50120.1	Thale cress	nucleus	80.52	79.9
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	55.06	52.22
KRH57017	Soybean	plastid	53.25	52.03
PGSC0003DMT400062862	Potato	cytosol	51.69	50.51
KRH54449	Soybean	plastid	54.29	49.64
KRH63468	Soybean	plastid	53.51	49.28
KRH03365	Soybean	nucleus, plastid	50.65	48.03
CDY14665	Canola	plastid	49.61	46.93
CDY16242	Canola	plastid	49.35	46.45
GSMUA_Achr6P36100_001	Banana	cytosol	43.9	43.0
Solyc03g113850.1.1	Tomato	cytosol, plastid	50.65	41.14
HORVU7Hr1G039810.1	Barley	plastid	40.52	40.62
Zm00001d017994_P001	Maize	cytosol	37.4	40.45
TraesCS7B01G100800.1	Wheat	cytosol	39.48	39.38
Os02t0740900-01	Rice	plastid	41.04	38.82
GSMUA_Achr7P19910_001	Banana	cytosol	43.9	38.41
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	39.22	37.84
EES07284	Sorghum	cytosol	41.82	36.93
CDY03879	Canola	cytosol, mitochondrion	39.22	36.12
CDY51591	Canola	cytosol, mitochondrion	38.96	35.89
CDY70402	Canola	cytosol	33.51	35.64
CDX84954	Canola	plastid	38.96	35.55
CDY06729	Canola	cytosol	33.51	35.54
CDY24427	Canola	plastid	38.44	35.07
CDY36134	Canola	plastid	38.44	35.07
CDX95477	Canola	cytosol	33.77	34.95
CDY27587	Canola	plastid	38.7	34.25
TraesCS7D01G196700.1	Wheat	cytosol	41.56	32.19
TraesCS7A01G195200.1	Wheat	cytosol	41.3	31.93
CDX78047	Canola	plastid	33.25	30.62
CDX77053	Canola	cytosol	35.58	30.51
CDY48182	Canola	nucleus	35.58	30.51
CDY23176	Canola	cytosol, plastid	33.51	30.42
CDX73675	Canola	cytosol, mitochondrion, plastid	33.25	30.19
CDX76704	Canola	cytosol	36.1	29.89
CDY11480	Canola	cytosol	36.1	29.89
CDX92289	Canola	cytosol	34.81	29.26
CDX99296	Canola	cytosol	34.55	29.17
CDY02088	Canola	cytosol, mitochondrion, nucleus	34.29	29.07
CDY23013	Canola	cytosol	34.29	29.01
CDX82320	Canola	nucleus	34.55	28.98
CDY69149	Canola	cytosol	34.29	28.76
CDY18561	Canola	cytosol	34.29	28.57
CDY17780	Canola	cytosol	34.03	28.42
CDY52834	Canola	cytosol	33.77	28.14
CDY16499	Canola	nucleus	33.77	27.84
CDX69050	Canola	cytosol	34.03	27.7
CDX75426	Canola	cytosol	34.29	27.56
CDY45305	Canola	cytosol	34.81	27.4
CDX72479	Canola	cytosol	34.81	27.4
CDX77246	Canola	nucleus	33.25	27.29
CDY46256	Canola	cytosol	34.29	26.99
CDX76276	Canola	cytosol	34.29	26.99
CDX84804	Canola	nucleus	11.69	17.31

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078JYY2	EnsemblPlants:CDY70872	ProteinID:CDY70872	ProteinID:CDY70872.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00008151001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF322	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE788E
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

BnaAnng35380DBnaAnng35380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYY2]

Coordinates

chrLK043607:-:1072..2240

Molecular Weight (calculated)

42600.6 Da

IEP (calculated)

7.609

GRAVY (calculated)

-0.262

Length

385 amino acids

Sequence
(BLAST)

001: MIRCHETQEE GDWSHEDHQI SISQAFHQCI ATLVGHTSSY ISSLTLAGKR LYTGSSDGLV RLWDANSMET LAEASSNGDV ITGERGDGGA VKSLVILADK
101: LFTAHQDQKI RVWKINDVVE EAEASNKKYM HIATMPTMSD RLAKCLMPNN QVQIRRHKKA SWVHHVDAVS GLALSRDGAL LYSVSWDRTL KIWRTTDFKC
201: LESITNAHED AINAVELSEN GDIYTGSSDR KIKVWRRRTS MRRKRKRINI IWLQHYSGIN ALALSSYNLL YSGGSDGSIL VWERDHEGGD IAVAGGLRGH
301: TESVLCLAVV SDIVCSGSAD KTVRLWKCSL ADYSCLAVLE GHRGPVKCLT GAIRDSGTQS EASYHIYSGG LDSQVKVWQI LVPTL

Best Arabidopsis Sequence Match ( AT5G50120.1 )
(BLAST)

001: MIQFQESEEE PDFSQEDHLT SSSQPLHQCI ATLVCHTASY ISSLTLAGKR LYTGSNDGVV RLWNANTLET LAEASSNGDV ITGERGGGGA VKSLVILADK
101: LFTAHQDHKI RVWKINDVVE EDVGGKKYMH LATMPTISDR FAKCLMPKNQ VEIRRHKKAS WVHHVDAVSG LALSRDGTLL YSVSWDRTLK IWRTTDFKCL
201: ESFTNAHDDA INAVALSENG DIYTGSSDQR IKVWRKNINE ENVKKKRKHS LVAILSEHNS GINALALSGT NGSLLHSGGS DGSILVWERD DGGDIVVVGM
301: LRGHTESVLC LAVVSDILCS GSADKTVRLW KCSAKDYSCL AMLEGHLGPV KCLTGAFRDS RKADEASYHI YSGGLDSQVK VWQVLVPA

Arabidopsis Description

Similarity to GTP-binding regulatory protein and WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9FG99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.