Factsheet for AT5G50120.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21432	Canola	cytosol, nucleus, plastid	82.73	82.73
Bra000611.1-P	Field mustard	nucleus	82.73	82.52
CDY70872	Canola	nucleus	79.9	80.52
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	57.47	54.93
KRH57017	Soybean	plastid	55.41	54.57
PGSC0003DMT400062862	Potato	cytosol	52.84	52.03
KRH54449	Soybean	plastid	55.41	51.07
KRH03365	Soybean	nucleus, plastid	53.35	50.99
KRH63468	Soybean	plastid	54.38	50.48
AT1G24130.1	Thale cress	cytosol, plastid	50.52	47.23
Solyc03g113850.1.1	Tomato	cytosol, plastid	52.84	43.25
GSMUA_Achr6P36100_001	Banana	cytosol	43.56	43.0
HORVU7Hr1G039810.1	Barley	plastid	39.95	40.36
GSMUA_Achr7P19910_001	Banana	cytosol	45.1	39.77
TraesCS7B01G100800.1	Wheat	cytosol	39.18	39.38
Zm00001d017994_P001	Maize	cytosol	36.08	39.33
Os02t0740900-01	Rice	plastid	40.72	38.82
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	39.18	38.1
AT1G24530.1	Thale cress	cytosol, plastid	40.72	37.8
AT1G47610.1	Thale cress	cytosol	32.99	36.47
EES07284	Sorghum	cytosol	40.72	36.24
TraesCS7D01G196700.1	Wheat	cytosol	41.24	32.19
TraesCS7A01G195200.1	Wheat	cytosol	41.24	32.13
AT3G51930.1	Thale cress	cytosol, plastid	33.51	31.33
AT2G26490.1	Thale cress	cytosol	36.86	30.75
AT3G18950.1	Thale cress	cytosol, nucleus, plastid	35.05	28.75
AT1G49450.1	Thale cress	nucleus	34.54	28.45
AT3G50390.1	Thale cress	cytosol	33.76	27.93
AT4G34380.1	Thale cress	cytosol	34.28	26.87

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:835077	ProteinID:AED95899.1	ArrayExpress:AT5G50120	EnsemblPlantsGene:AT5G50120
RefSeq:AT5G50120	TAIR:AT5G50120	RefSeq:AT5G50120-TAIR-G	EnsemblPlants:AT5G50120.1	TAIR:AT5G50120.1	ProteinID:BAB10298.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	RefSeq:NP_199823.1	PFAM:PF00400	PO:PO:0000037	PO:PO:0007611
PO:PO:0009005	PO:PO:0009046	PO:PO:0020100	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF322	UniProt:Q9FG99	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI00000A7020	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

Similarity to GTP-binding regulatory protein and WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9FG99]

Coordinates

chr5:-:20382310..20384025

Molecular Weight (calculated)

42507.4 Da

IEP (calculated)

6.946

GRAVY (calculated)

-0.234

Length

388 amino acids

Sequence
(BLAST)

001: MIQFQESEEE PDFSQEDHLT SSSQPLHQCI ATLVCHTASY ISSLTLAGKR LYTGSNDGVV RLWNANTLET LAEASSNGDV ITGERGGGGA VKSLVILADK
101: LFTAHQDHKI RVWKINDVVE EDVGGKKYMH LATMPTISDR FAKCLMPKNQ VEIRRHKKAS WVHHVDAVSG LALSRDGTLL YSVSWDRTLK IWRTTDFKCL
201: ESFTNAHDDA INAVALSENG DIYTGSSDQR IKVWRKNINE ENVKKKRKHS LVAILSEHNS GINALALSGT NGSLLHSGGS DGSILVWERD DGGDIVVVGM
301: LRGHTESVLC LAVVSDILCS GSADKTVRLW KCSAKDYSCL AMLEGHLGPV KCLTGAFRDS RKADEASYHI YSGGLDSQVK VWQVLVPA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.