CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54449	Soybean	plastid	89.95	89.31
KRH57017	Soybean	plastid	63.88	67.77
KRH03365	Soybean	nucleus, plastid	63.64	65.52
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	60.05	61.82
PGSC0003DMT400062862	Potato	cytosol	54.31	57.61
CDY21432	Canola	cytosol, nucleus, plastid	51.67	55.67
Bra000611.1-P	Field mustard	nucleus	51.2	55.01
AT5G50120.1	Thale cress	nucleus	50.48	54.38
KRH74694	Soybean	nucleus	55.98	54.04
CDY70872	Canola	nucleus	49.28	53.51
KRH69465	Soybean	nucleus	55.26	52.62
Solyc03g113850.1.1	Tomato	cytosol, plastid	54.78	48.31
GSMUA_Achr6P36100_001	Banana	cytosol	45.22	48.09
Os02t0740900-01	Rice	plastid	44.5	45.7
GSMUA_Achr7P19910_001	Banana	cytosol	47.13	44.77
HORVU7Hr1G039810.1	Barley	plastid	40.91	44.53
Zm00001d017994_P001	Maize	cytosol	37.8	44.38
TraesCS7B01G100800.1	Wheat	cytosol	40.91	44.3
KRH43090	Soybean	plastid	43.78	42.46
EES07284	Sorghum	cytosol	44.26	42.43
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	38.52	40.35
KRH57169	Soybean	cytosol, plasma membrane	32.78	40.18
KRH03884	Soybean	cytosol	33.49	37.23
TraesCS7A01G195200.1	Wheat	cytosol	41.15	34.54
TraesCS7D01G196700.1	Wheat	cytosol	40.43	34.0
KRH39863	Soybean	cytosol, plastid	31.82	31.97
KRH15278	Soybean	cytosol	27.75	31.87
KRH05757	Soybean	nucleus	35.17	31.55
KRH28540	Soybean	nucleus	33.25	30.35
KRH76925	Soybean	nucleus	33.25	30.22
KRH62060	Soybean	cytosol	28.95	29.16
KRH52729	Soybean	cytosol	31.82	29.1
KRH23424	Soybean	plastid	27.03	25.62
KRH09907	Soybean	cytosol, plastid	13.64	21.84
KRH24543	Soybean	cytosol, nucleus	33.01	18.28

Protein Annotations

EntrezGene:100777242	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02002694	EnsemblPlantsGene:GLYMA_04G178800	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K7KKU2
EnsemblPlants:KRH63468	ProteinID:KRH63468	ProteinID:KRH63468.1	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF278	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00023397C5	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:44358368..44359921

Molecular Weight (calculated)

46098.2 Da

IEP (calculated)

8.715

GRAVY (calculated)

-0.371

Length

418 amino acids

Sequence
(BLAST)

001: MEYQYPSSYS VSSSSHSNHH QQGSTTKSLS SSQRSLISVP SLNHHHLHTP NPSVYHHCLT TLKGHTSYIS SLTLSGKFLY TGSSDREIRS WNRIPENSST
101: DNSNNNNNNS TVLAGKGAVK SLVIQSNKLF SAHQDNKIRV WKISNNDDDH HHQKYTHVAT LPTLGDRASK ILIPKNKVQI RRHKKCTWVH HVDTVSALAL
201: SKDGALLYSV SWDRTLKIWK TKDFTCLESL ANAHDDAINA VAVSYDGCVY TGSADKRIKV WKKFAGEKKH TLIETLEKHN SGVNALALSS DENVLYSGAC
301: DRAILVWEKE GDDGKMGVVG ALRGHTMSIL CLSVAADLVC SGSADKTIRV WRGSVDAHEY SCLAVLEGHR GSIKCISAVV DHCNNTNTWS QSEALSFLVY
401: SGGLDCHIKV WQILVPAI

Best Arabidopsis Sequence Match ( AT5G50120.1 )
(BLAST)

001: MIQFQESEEE PDFSQEDHLT SSSQPLHQCI ATLVCHTASY ISSLTLAGKR LYTGSNDGVV RLWNANTLET LAEASSNGDV ITGERGGGGA VKSLVILADK
101: LFTAHQDHKI RVWKINDVVE EDVGGKKYMH LATMPTISDR FAKCLMPKNQ VEIRRHKKAS WVHHVDAVSG LALSRDGTLL YSVSWDRTLK IWRTTDFKCL
201: ESFTNAHDDA INAVALSENG DIYTGSSDQR IKVWRKNINE ENVKKKRKHS LVAILSEHNS GINALALSGT NGSLLHSGGS DGSILVWERD DGGDIVVVGM
301: LRGHTESVLC LAVVSDILCS GSADKTVRLW KCSAKDYSCL AMLEGHLGPV KCLTGAFRDS RKADEASYHI YSGGLDSQVK VWQVLVPA

Arabidopsis Description

Similarity to GTP-binding regulatory protein and WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9FG99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.