Factsheet for PGSC0003DMT400062862

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113850.1.1	Tomato	cytosol, plastid	93.91	78.06
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	60.91	59.11
KRH57017	Soybean	plastid	54.82	54.82
KRH63468	Soybean	plastid	57.61	54.31
KRH54449	Soybean	plastid	57.61	53.92
Bra000611.1-P	Field mustard	nucleus	53.05	53.73
CDY21432	Canola	cytosol, nucleus, plastid	52.79	53.61
KRH03365	Soybean	nucleus, plastid	55.08	53.45
AT5G50120.1	Thale cress	nucleus	52.03	52.84
CDY70872	Canola	nucleus	50.51	51.69
PGSC0003DMT400004842	Potato	plastid	53.55	48.96
PGSC0003DMT400040333	Potato	cytosol	52.79	48.26
GSMUA_Achr6P36100_001	Banana	cytosol	43.15	43.26
Os02t0740900-01	Rice	plastid	44.16	42.75
Zm00001d017994_P001	Maize	cytosol	38.58	42.7
EES07284	Sorghum	cytosol	45.94	41.51
HORVU7Hr1G039810.1	Barley	plastid	40.1	41.15
GSMUA_Achr7P19910_001	Banana	cytosol	45.18	40.45
TraesCS7B01G100800.1	Wheat	cytosol	39.34	40.16
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	39.59	39.1
PGSC0003DMT400043704	Potato	plastid	42.13	38.07
PGSC0003DMT400039941	Potato	cytosol	34.52	33.42
TraesCS7A01G195200.1	Wheat	cytosol	40.36	31.93
PGSC0003DMT400017340	Potato	plastid	32.99	31.63
TraesCS7D01G196700.1	Wheat	cytosol	39.85	31.59
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	36.29	30.69
PGSC0003DMT400016680	Potato	cytosol	34.01	30.04
PGSC0003DMT400008621	Potato	mitochondrion	32.23	29.53
PGSC0003DMT400026153	Potato	nucleus	34.26	29.35
PGSC0003DMT400059001	Potato	extracellular	34.01	29.19
PGSC0003DMT400024834	Potato	cytosol	31.73	26.32
PGSC0003DMT400068048	Potato	cytosol, plastid	27.92	24.28

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M1C9N5	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400024470	PGSC:PGSC0003DMG400024470
EnsemblPlants:PGSC0003DMT400062862	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF278	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000296752C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

F-box and wd40 domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024470]

Coordinates

chr3:+:53697414..53698920

Molecular Weight (calculated)

43792.3 Da

IEP (calculated)

8.305

GRAVY (calculated)

-0.193

Length

394 amino acids

Sequence
(BLAST)

001: MPFYQTSCSR NSSKVDSQPS FRSVPSIKSL CHDQSFSHNL ETQHQCIANL KGQNSYTSSL VLGGKYLFTG SSDKEICMWE QKALTSTIDA GIIDTVIAGK
101: GAVKSLVILA DKVFSAHQDH KIRVWRIENH DTDTPKIVHL ATLPLLSDRA FKFMVPKNHV QIRRHKKSTW VHHVDTVSAL ALSNDESFLY SVSWDRTLKI
201: WRTSDFKCLE SIANAHDDAI NTLEISQEGD VFTGSADKKI KMWRKEEKKH LLVCTLEKHR SGVNALAVGR SSTSTDSVLY SGACDRSILV WEKDESGDMV
301: LVGALRGHKK SILCLAVVAD LVCSGSADKT VRVWRGVERC YSCLSVISGH SGPVKCLTVT SDQQIPSDTT SSYILYTASL DGETMVWKIY VPFL

Best Arabidopsis Sequence Match ( AT5G50120.1 )
(BLAST)

001: MIQFQESEEE PDFSQEDHLT SSSQPLHQCI ATLVCHTASY ISSLTLAGKR LYTGSNDGVV RLWNANTLET LAEASSNGDV ITGERGGGGA VKSLVILADK
101: LFTAHQDHKI RVWKINDVVE EDVGGKKYMH LATMPTISDR FAKCLMPKNQ VEIRRHKKAS WVHHVDAVSG LALSRDGTLL YSVSWDRTLK IWRTTDFKCL
201: ESFTNAHDDA INAVALSENG DIYTGSSDQR IKVWRKNINE ENVKKKRKHS LVAILSEHNS GINALALSGT NGSLLHSGGS DGSILVWERD DGGDIVVVGM
301: LRGHTESVLC LAVVSDILCS GSADKTVRLW KCSAKDYSCL AMLEGHLGPV KCLTGAFRDS RKADEASYHI YSGGLDSQVK VWQVLVPA

Arabidopsis Description

Similarity to GTP-binding regulatory protein and WD-repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9FG99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.