Factsheet for PGSC0003DMT400068048

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044320.1.1	Tomato	cytosol, plastid	97.57	97.57
KRH23424	Soybean	plastid	59.16	60.77
KRH09907	Soybean	cytosol, plastid	33.11	57.47
VIT_09s0002g04060.t01	Wine grape	nucleus	71.08	33.93
PGSC0003DMT400039941	Potato	cytosol	27.15	30.22
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	30.68	29.83
PGSC0003DMT400008621	Potato	mitochondrion	28.04	29.53
PGSC0003DMT400024834	Potato	cytosol	30.46	29.05
PGSC0003DMT400059001	Potato	extracellular	28.7	28.32
PGSC0003DMT400016680	Potato	cytosol	27.81	28.25
PGSC0003DMT400040333	Potato	cytosol	26.71	28.07
PGSC0003DMT400026153	Potato	nucleus	28.48	28.04
PGSC0003DMT400062862	Potato	cytosol	24.28	27.92
PGSC0003DMT400004842	Potato	plastid	26.49	27.84
PGSC0003DMT400043704	Potato	plastid	26.71	27.75
PGSC0003DMT400017340	Potato	plastid	23.62	26.03

Protein Annotations

EntrezGene:102601653	Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1CIC7	PFAM:PF00400
EnsemblPlantsGene:PGSC0003DMG400026464	PGSC:PGSC0003DMG400026464	EnsemblPlants:PGSC0003DMT400068048	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002966C8E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006359483.1	SEG:seg	:	:

Description

F-box and wd40 domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026464]

Coordinates

chr12:+:50691322..50693938

Molecular Weight (calculated)

50074.4 Da

IEP (calculated)

8.054

GRAVY (calculated)

-0.261

Length

453 amino acids

Sequence
(BLAST)

001: MASPIDLEPP NSLSSSAPSF AIRPDNNNNN HLNNSFLRSL STKEPLNFSE QLPYSPPRLS TSALPSNTYS QPSTPRLSFT LNNPSTKSVD EDHPDFHQTS
101: YRCISSVLKK DGQILSVAVS NGLVYTGSQA NLIRVWKLPE FTECDHLKTR ASSMVVSLQV SNDMIYAAYG DCKIRVWRRT WEGVIKHVRV ATIPKVGSYV
201: RSYISGRDKM MKHMGPISSL AINISDDILY SASLDRTVKV WRISDLKCIE TIQAHNDPIN DIVVGDDGVL YTASDDATVR VWRRNFCSGD RPHSLTVTLP
301: AKCSPVKTLA LTTDGGVLYG GCSDGYIHYW LKGWFSGQLQ YGGALLGHTH AVMCLASMAN YLVSGSADST CRVWFREQQD CQHVCVAILQ GHRGPIRCVA
401: AFPRLVNEEN EDGCTVCTGS LDGVLKMWRV RRTSISDKGK GSSQNACEYF EIA

Best Arabidopsis Sequence Match ( AT1G49450.1 )
(BLAST)

001: MAIEENRSHN DYLRRMTFAA FLKSGSLAAE EETYHSDGDH HNQSTFSSNS DSQRPSNASS ASSDSSSPIY PLSPWNQTYY PSNDNTTSFS SVTQSPWNQT
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S

Arabidopsis Description

F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.