Factsheet for PGSC0003DMT400016680

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g025140.2.1	Tomato	cytosol	93.05	93.89
PGSC0003DMT400039941	Potato	cytosol	66.82	73.22
PGSC0003DMT400008621	Potato	mitochondrion	69.51	72.09
VIT_18s0001g11600.t01	Wine grape	nucleus	67.94	66.45
Bra034310.1-P	Field mustard	nucleus	63.9	63.47
CDY48182	Canola	nucleus	63.9	63.47
Bra007751.1-P	Field mustard	nucleus	63.68	63.11
CDX77053	Canola	cytosol	63.23	62.81
CDX76704	Canola	cytosol	65.02	62.37
CDY11480	Canola	cytosol	65.02	62.37
AT2G26490.1	Thale cress	cytosol	64.13	61.51
KRH15278	Soybean	cytosol	49.78	60.99
KRH05757	Soybean	nucleus	60.09	57.51
PGSC0003DMT400059001	Potato	extracellular	54.71	53.16
GSMUA_Achr3P30740_001	Banana	cytosol	41.7	53.14
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	55.38	53.0
PGSC0003DMT400026153	Potato	nucleus	53.81	52.17
Os03t0738700-01	Rice	plasma membrane	57.17	52.15
TraesCS5D01G389000.1	Wheat	cytosol	54.71	51.37
TraesCS5B01G382700.1	Wheat	cytosol	54.71	51.37
TraesCS5A01G379200.1	Wheat	cytosol	54.71	51.15
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	55.61	51.03
HORVU5Hr1G093830.1	Barley	cytosol	54.71	50.94
GSMUA_Achr6P20880_001	Banana	cytosol	40.13	45.66
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	37.89	45.31
GSMUA_AchrUn_...	Banana	nucleus	38.12	42.71
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	40.58	36.35
PGSC0003DMT400040333	Potato	cytosol	33.86	35.03
PGSC0003DMT400004842	Potato	plastid	33.18	34.34
PGSC0003DMT400062862	Potato	cytosol	30.04	34.01
PGSC0003DMT400017340	Potato	plastid	30.72	33.33
PGSC0003DMT400043704	Potato	plastid	30.72	31.42
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	42.6	29.69
PGSC0003DMT400024834	Potato	cytosol	31.17	29.26
PGSC0003DMT400068048	Potato	cytosol, plastid	28.25	27.81

Protein Annotations

EntrezGene:102579547	Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1A809	PFAM:PF00400
EnsemblPlantsGene:PGSC0003DMG400006520	PGSC:PGSC0003DMG400006520	EnsemblPlants:PGSC0003DMT400016680	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF128	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000295A89D	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006351936.1	SEG:seg	:

Description

F-box and wd40 domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006520]

Coordinates

chr7:-:22991276..22992861

Molecular Weight (calculated)

49248.9 Da

IEP (calculated)

8.788

GRAVY (calculated)

-0.437

Length

446 amino acids

Sequence
(BLAST)

001: MFVDTSHLPP KLGNTVHSDP NISSSHIDDD ADNNNSNYNA RHSSFSAYEA NRLSGEGSPM MMSPWNQGSP WSKFDEGNNS QNNNIPQING LIGSLVREEG
101: HIYSLATKND LLYTGSDSKN IRVWKNLKEF AAFKSNSGLV KAIIISGEKI FTGHQDGKVR VWKIQTKNPG TYKRAGTLPS FFDIFKASIR PSNYVEVKRN
201: RSGLWIKHVD AISCLSMDQT RGLLYSASWD RTFKVWNVDN SKCIESVKAH DDAVNSVVTS VEGIVYTGSA DGTVKVWQRE NSGKHPKHVF VQTLLNQECA
301: VTALVVSKSG SVVYCGSSDG VVNFWEREKQ LSHGGVLKGH KLAILCLAAA GNLVLSGSAD KTICVWRRDN KSIHTLLSVL TGHNGPVKCL AVEEDKESTQ
401: TDQKWVVYSG SLDKSVKVWS VSEKAPMMMH NNMNADNNVS WDSAKY

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.