Factsheet for PGSC0003DMT400004842

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005020.2.1	Tomato	plastid	91.88	92.31
PGSC0003DMT400040333	Potato	cytosol	63.34	63.34
VIT_01s0026g00880.t01	Wine grape	cytosol	60.32	60.89
AT1G24130.1	Thale cress	cytosol, plastid	55.92	58.07
CDY16242	Canola	plastid	54.52	57.46
Bra024637.1-P	Field mustard	plastid	54.29	57.35
CDY14665	Canola	plastid	53.6	56.76
KRH74694	Soybean	nucleus	55.45	55.2
KRH69465	Soybean	nucleus	54.76	53.76
PGSC0003DMT400062862	Potato	cytosol	48.96	53.55
GSMUA_Achr6P36100_001	Banana	cytosol	44.08	48.35
Os02t0740900-01	Rice	plastid	41.76	44.23
GSMUA_Achr7P19910_001	Banana	cytosol	44.55	43.64
TraesCS7B01G100800.1	Wheat	cytosol	38.98	43.52
HORVU7Hr1G039810.1	Barley	plastid	38.75	43.49
Zm00001d017994_P001	Maize	cytosol	35.03	42.42
EES07284	Sorghum	cytosol	42.23	41.74
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	38.05	41.1
PGSC0003DMT400043704	Potato	plastid	39.44	38.99
PGSC0003DMT400039941	Potato	cytosol	32.71	34.64
PGSC0003DMT400017340	Potato	plastid	32.48	34.06
TraesCS7A01G195200.1	Wheat	cytosol	38.98	33.73
TraesCS7D01G196700.1	Wheat	cytosol	38.52	33.4
PGSC0003DMT400016680	Potato	cytosol	34.34	33.18
PGSC0003DMT400008621	Potato	mitochondrion	32.71	32.79
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	35.27	32.62
PGSC0003DMT400026153	Potato	nucleus	32.95	30.87
PGSC0003DMT400059001	Potato	extracellular	32.48	30.5
PGSC0003DMT400024834	Potato	cytosol	31.32	28.42
PGSC0003DMT400068048	Potato	cytosol, plastid	27.84	26.49

Protein Annotations

EntrezGene:102602577	Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0ZP22	PFAM:PF00400
EnsemblPlantsGene:PGSC0003DMG400001922	PGSC:PGSC0003DMG400001922	EnsemblPlants:PGSC0003DMT400004842	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF278	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00029691A1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006363568.1	SEG:seg	:

Description

F-box and wd40 domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001922]

Coordinates

chr00:-:12357474..12359346

Molecular Weight (calculated)

48041.3 Da

IEP (calculated)

8.909

GRAVY (calculated)

-0.230

Length

431 amino acids

Sequence
(BLAST)

001: MGFLPCCLPC QSKKKPLDSS DQTQCRHLPS NSSSSLISLS SRSLSLSLSS RSFSSQPSLP SIPSLSISSS QVEYLSNTFH HCLATLTVHS SYIFCLSIVE
101: KHLYYGSSNG EILVWDINPS RQDNCLKGKT VCQSGSAIKS IVIMGDKLFS AHQDHRIRVW KIDNETPNRN YKCIATLPTI NDRCMKLFWT RNYVQVRRHK
201: KCTWVHHVDT VSALALSKDG SLLYSASWDR TFKIWRSSDF KCLESVWNAH DDAINSIVVS NNGHVYTGSA DKKIKIWTKQ QEGSNKHTLM TTLKKHKSAV
301: NALALSTDGC VLYSGACDRS IIVWEKLQVL GALRGHKKSI LCLAVVSNDL LCSGSADKTV RIWKRGFGKS CYSCLAVFEG HNGPVKCLTA TLDSQKYDDD
401: DSCSGSSYMI YSGSLDCDVK VWKLWVPNYL S

Best Arabidopsis Sequence Match ( AT1G24130.1 )
(BLAST)

001: MGLLPCSCPL PCNETRSECE TKSTHHQSES STSSSLLSQP SLPLVPSLSF QHQSSSVDHH CLATLKDKSS YVSSLAVSDK LLYTGSSNSE IRVWPREPPF
101: SPEYSTGDDR NVVANGNGGV KSLVILGDKL ISAHQDHKIR VWKIIDESNR RGQKYKCVAT LPTMNDRFKT LFSSKSYVEV RRHKKCTWVH HVDAVSSLAL
201: SQDGSLLYSA SWDRSFKIWR TSDFKCLDSI EKAHDDAINA IVVSKDGFVY TGSADKKIKV WNKKDKKHSL VATLTKHLSA VNALAISEDG KVLYSGACDR
301: SILVWERLIN GDDEELHMSV VGALRGHRKA IMCLAVASDL VLSGSADKSL RVWRRGLMEK EGYSCLAVLE GHTKPVKSLA VSVSDSDSNS DYSCMVYSGS
401: LDLSLKVWNL RVSSI

Arabidopsis Description

F3I6.5 protein [Source:UniProtKB/TrEMBL;Acc:O48679]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.