Factsheet for PGSC0003DMT400017340

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g068250.2.1	Tomato	cytosol	92.7	91.59
VIT_13s0019g01680.t01	Wine grape	plastid	71.05	73.55
KRH39863	Soybean	cytosol, plastid	70.8	69.95
CDX78047	Canola	plastid	66.42	65.31
AT3G51930.1	Thale cress	cytosol, plastid	65.69	65.06
Bra006883.1-P	Field mustard	plastid	66.18	64.15
GSMUA_Achr11P...	Banana	cytosol	57.91	63.98
CDX73675	Canola	cytosol, mitochondrion, plastid	65.94	63.92
CDY23176	Canola	cytosol, plastid	65.45	63.44
Bra033466.1-P	Field mustard	cytosol, plastid	64.72	62.74
TraesCS3A01G485100.1	Wheat	plastid	51.82	51.2
Os01t0946100-02	Rice	cytosol, plastid	52.8	50.35
TraesCS3D01G480400.1	Wheat	plastid	52.31	50.23
TraesCS3B01G532800.1	Wheat	cytosol, plastid	52.07	49.54
KXG34097	Sorghum	plastid	52.31	49.09
HORVU3Hr1G106030.1	Barley	plastid	52.07	49.08
Zm00001d042132_P001	Maize	plastid	45.5	46.52
PGSC0003DMT400039941	Potato	cytosol	33.82	34.15
PGSC0003DMT400062862	Potato	cytosol	31.63	32.99
PGSC0003DMT400004842	Potato	plastid	34.06	32.48
PGSC0003DMT400040333	Potato	cytosol	33.82	32.25
PGSC0003DMT400008621	Potato	mitochondrion	33.09	31.63
PGSC0003DMT400026153	Potato	nucleus	35.28	31.52
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	35.28	31.12
PGSC0003DMT400016680	Potato	cytosol	33.33	30.72
PGSC0003DMT400043704	Potato	plastid	32.12	30.28
PGSC0003DMT400059001	Potato	extracellular	33.33	29.85
PGSC0003DMT400024834	Potato	cytosol	28.22	24.42
PGSC0003DMT400068048	Potato	cytosol, plastid	26.03	23.62

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1A8T9	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400006751
PGSC:PGSC0003DMG400006751	EnsemblPlants:PGSC0003DMT400017340	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF223
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000295E56B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

F-box and wd40 domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006751]

Coordinates

chr1:+:64302579..64304335

Molecular Weight (calculated)

44991.7 Da

IEP (calculated)

8.709

GRAVY (calculated)

-0.176

Length

411 amino acids

Sequence
(BLAST)

001: MASPAYTTPL LSESSNSIIS TTSSSRSSSE SEESPETSQR FQDFQLLDLQ LKISRTPISC FHSYKSLAVL SGHVGTVSCL ALCGEFILSA SQGKDIIVWQ
101: QPDLRQFTKF GTGDGSVKAL VTIGNNVFTA HQDSRIRVWK VSRRSENVFR LIDTLPTTKD YLGKFMKQSN YVQTRRHHKK LWIEHADSIS CLAVSNGYIY
201: SGSWDKSLKV WRISDLKCLE SIKAHDDAIN GLVASKNGVV YSASADGKIK AWKSSSGTHS LKGILEGHKD VSLNSVVVSE DGVFVYGGGS DGYVIGWVGN
301: KNLDSWKLIC EVKAHEMAVL CMCLMMGEFL CSGSADKSIC IWKREINGGL FKFGVIKGHE GPVKCLQAST GSVGGGFMLY SGSLDKSLRV WWIPKYGGDG
401: DEKKDSSLIT K

Best Arabidopsis Sequence Match ( AT3G51930.1 )
(BLAST)

001: MVRSIQEGVL MSSSSSSTTS NSNDSDGSLS PSASTKSFVL NTLRPPITGA YKPLAVLSAH VGSVSSLALC GEFLLSASQG KDIIVWQQPD LKIFAKFGQG
101: DGSVKALVSV GSKVFTAHQD SRIRVWKVSR RNSENAFRLV DTLPTTKDYL GKFMKQSNYV QTRRNHKRLW IEHADSISCL AVHAGIIYSG SWDKTLKVWR
201: LSDLKCLESI KAHDDAINGL VAGDGRVYSA SADGKVKIWG KEKRKQIEST SSSSSSLHVL KATLEGRAEV SVNSVVVSGD GNWVYGGGSD GFVIGWEKKE
301: KEGDFEEWRL GFETRGHNMA VLCMCVVGEM VCSGSADKSI GLWRREVTGM LCKFGVIHGH EGPVKCLQAS PNNVGAGFML YSGGLDKSLR VWWVPKQDNL
401: EEKKSSFKTL LTQKE

Arabidopsis Description

At3g51930 [Source:UniProtKB/TrEMBL;Acc:Q9SV11]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.