Factsheet for PGSC0003DMT400008621

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g079700.2.1	Tomato	cytosol	93.26	90.32
PGSC0003DMT400039941	Potato	cytosol	69.77	73.71
PGSC0003DMT400016680	Potato	cytosol	72.09	69.51
VIT_18s0001g11600.t01	Wine grape	nucleus	66.98	63.16
Bra034310.1-P	Field mustard	nucleus	65.12	62.36
CDY48182	Canola	nucleus	65.12	62.36
Bra007751.1-P	Field mustard	nucleus	64.88	62.0
CDX77053	Canola	cytosol	64.65	61.92
AT2G26490.1	Thale cress	cytosol	64.88	60.0
CDX76704	Canola	cytosol	64.88	60.0
CDY11480	Canola	cytosol	64.88	60.0
KRH15278	Soybean	cytosol	49.3	58.24
KRH05757	Soybean	nucleus	62.09	57.3
Os03t0738700-01	Rice	plasma membrane	58.84	51.74
GSMUA_Achr3P30740_001	Banana	cytosol	42.09	51.71
PGSC0003DMT400026153	Potato	nucleus	54.88	51.3
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	55.35	51.07
PGSC0003DMT400059001	Potato	extracellular	54.19	50.76
TraesCS5D01G389000.1	Wheat	cytosol	55.58	50.32
TraesCS5B01G382700.1	Wheat	cytosol	55.58	50.32
TraesCS5A01G379200.1	Wheat	cytosol	55.58	50.1
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	56.28	49.79
HORVU5Hr1G093830.1	Barley	cytosol	55.35	49.69
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	39.77	45.84
GSMUA_Achr6P20880_001	Banana	cytosol	39.3	43.11
GSMUA_AchrUn_...	Banana	nucleus	39.3	42.46
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	42.33	36.55
PGSC0003DMT400040333	Potato	cytosol	33.95	33.87
PGSC0003DMT400017340	Potato	plastid	31.63	33.09
PGSC0003DMT400004842	Potato	plastid	32.79	32.71
PGSC0003DMT400062862	Potato	cytosol	29.53	32.23
PGSC0003DMT400043704	Potato	plastid	30.47	30.05
PGSC0003DMT400024834	Potato	cytosol	32.79	29.68
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	43.26	29.06
PGSC0003DMT400068048	Potato	cytosol, plastid	29.53	28.04

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0ZUU4	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400003339
PGSC:PGSC0003DMG400003339	EnsemblPlants:PGSC0003DMT400008621	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF128	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000295F4CB	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

F-box and wd40 domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003339]

Coordinates

chr4:-:69049779..69051761

Molecular Weight (calculated)

47555.3 Da

IEP (calculated)

8.739

GRAVY (calculated)

-0.365

Length

430 amino acids

Sequence
(BLAST)

001: MSSTAVTDDD DFDVRHSSFS AYDPNRLSED GSPTMLSPWN QSCSPYTKSP WYNFDDDFPK NLPQNGLIGS LVREEGHIYS LAAKNDILYT GSDSKNIRVW
101: KDMKEFSAFK SNSGLVKAII IAREKIFTGH QDGKVRVWKV KSKNPNNHKR AGSLPKLIDI FKASIKPSNY VEVKRNRTTL WIKHCDAISC LSMDHSLGLL
201: YSASWDRTFK VWKVDNSKCL ESVKAHDDAV NSVVASIDGI VYTGSADGTV KVWKRESNGK TVNHVFVQTL LNQECAVTAL AVNKPGSVVY CGSSDGVLNF
301: WEREKKNLTH GGVLKGHKLA VLCLAVAGNL VFSGSADKNI IVWKRDGPVH MCLSILTGHN GPVKCLAGEE DTLSSSTGSE KKWVVYSGSL DKSVKIWSVS
401: EMAHNLHQMA TMQQNGQVDN SWDSIPSVKY

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.