Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400008621 | Potato | mitochondrion | 90.32 | 93.26 |
| Solyc12g088980.1.1 | Tomato | cytosol | 66.44 | 72.66 |
| Solyc07g025140.2.1 | Tomato | cytosol | 69.82 | 70.14 |
| VIT_18s0001g11600.t01 | Wine grape | nucleus | 66.89 | 65.13 |
| Bra034310.1-P | Field mustard | nucleus | 64.64 | 63.92 |
| CDY48182 | Canola | nucleus | 64.64 | 63.92 |
| CDX77053 | Canola | cytosol | 64.19 | 63.47 |
| Bra007751.1-P | Field mustard | nucleus | 64.19 | 63.33 |
| CDX76704 | Canola | cytosol | 64.19 | 61.29 |
| CDY11480 | Canola | cytosol | 64.19 | 61.29 |
| AT2G26490.1 | Thale cress | cytosol | 63.96 | 61.08 |
| KRH15278 | Soybean | cytosol | 48.42 | 59.07 |
| KRH05757 | Soybean | nucleus | 60.81 | 57.94 |
| Os03t0738700-01 | Rice | plasma membrane | 58.11 | 52.76 |
| Solyc02g090150.1.1 | Tomato | nucleus | 53.15 | 52.21 |
| TraesCS5D01G389000.1 | Wheat | cytosol | 55.86 | 52.21 |
| TraesCS5B01G382700.1 | Wheat | cytosol | 55.86 | 52.21 |
| TraesCS5A01G379200.1 | Wheat | cytosol | 55.86 | 51.99 |
| Solyc03g044830.2.1 | Tomato | nucleus | 53.38 | 51.86 |
| HORVU5Hr1G093830.1 | Barley | cytosol | 55.86 | 51.77 |
| GSMUA_Achr3P30740_001 | Banana | cytosol | 40.77 | 51.71 |
| EER93490 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 55.86 | 51.03 |
| Solyc01g109120.2.1 | Tomato | cytosol, mitochondrion | 52.93 | 50.54 |
| GSMUA_Achr4P10690_001 | Banana | cytosol, endoplasmic reticulum, plastid | 38.51 | 45.84 |
| GSMUA_Achr6P20880_001 | Banana | cytosol | 39.19 | 44.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.74 | 43.22 |
| GSMUA_Achr4P07470_001 | Banana | endoplasmic reticulum, plasma membrane | 41.44 | 36.95 |
| Solyc05g006340.2.1 | Tomato | cytosol | 32.88 | 35.18 |
| Solyc01g068250.2.1 | Tomato | cytosol | 31.08 | 33.17 |
| Solyc04g005020.2.1 | Tomato | plastid | 31.76 | 32.87 |
| Solyc03g111780.1.1 | Tomato | cytosol | 28.83 | 31.92 |
| Solyc05g013880.1.1 | Tomato | cytosol, plastid | 30.18 | 31.53 |
| GSMUA_Achr4P03080_001 | Banana | mitochondrion, nucleus, peroxisome, plasma membrane | 42.57 | 29.53 |
| Solyc12g044320.1.1 | Tomato | cytosol, plastid | 29.05 | 28.48 |
| Solyc03g113850.1.1 | Tomato | cytosol, plastid | 29.5 | 27.64 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:K4BV49 | PFAM:PF00400 | PRINTS:PR00320 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22844 | PANTHER:PTHR22844:SF128 | SMART:SM00320 | SUPFAM:SSF50978 |
| EnsemblPlantsGene:Solyc04g079700.2 | EnsemblPlants:Solyc04g079700.2.1 | UniParc:UPI00027673A0 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:64062520..64064314
Molecular Weight (calculated)
49064.1 Da
IEP (calculated)
8.389
GRAVY (calculated)
-0.396
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MVHSMPNMSS IAVMDDDDFD VRHSSFSAYD PNRLSEDGSP PMLSPWNQTC SPFTKSSWHN LDDNFPKNLP QNGLIGSLVR EEGHIYSLAA KNDILYTGSD
101: SKNIRVWKDM KEFSAFKSNS GLVKAIIIAG EKIFTGHQDG KVRVWKVQSK HPNNHKRAGS LPKLMDLFKA SIKPSNYVEV KRNRTTLWIK HCDAISCLSM
201: DHSEGLLYSA SWDRTFKVWK VDKSKCLESV KAHDDAVNSV VASVDGIVYT GSADGTVKVW KRESNGKTVN HVFVQTLLNQ ECAVTALAVN KPGSVVYSGS
301: SDGFLNFWER EKKKLTHGGV LKGHKLAVLC LAAAGNLVFS GSADKNIIVW KRDGPVHMCL SILTGHNGPV KCLAVEEDKE SSSTGSEKKW VVYSGSLDKS
401: VKVWSVTEMA NNLHEMATMQ QNGQEDNSWD SIPSVKYSSD GLSM
101: SKNIRVWKDM KEFSAFKSNS GLVKAIIIAG EKIFTGHQDG KVRVWKVQSK HPNNHKRAGS LPKLMDLFKA SIKPSNYVEV KRNRTTLWIK HCDAISCLSM
201: DHSEGLLYSA SWDRTFKVWK VDKSKCLESV KAHDDAVNSV VASVDGIVYT GSADGTVKVW KRESNGKTVN HVFVQTLLNQ ECAVTALAVN KPGSVVYSGS
301: SDGFLNFWER EKKKLTHGGV LKGHKLAVLC LAAAGNLVFS GSADKNIIVW KRDGPVHMCL SILTGHNGPV KCLAVEEDKE SSSTGSEKKW VVYSGSLDKS
401: VKVWSVTEMA NNLHEMATMQ QNGQEDNSWD SIPSVKYSSD GLSM
001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH
Arabidopsis Description
JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.