Factsheet for Solyc01g109120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34380.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT4G34380.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT4G34380.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT4G34380.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT4G34380.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT4G34380.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT4G34380.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT4G34380.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT4G34380.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT4G34380.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT4G34380.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT4G34380.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT4G34380.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT4G34380.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT4G34380.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT4G34380.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT4G34380.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	96.77	96.57
Bra037545.1-P	Field mustard	cytosol	52.04	65.05
CDX95477	Canola	cytosol	50.97	63.71
VIT_03s0063g01790.t01	Wine grape	cytosol	58.71	61.35
Bra001728.1-P	Field mustard	nucleus	55.27	55.99
CDX82320	Canola	nucleus	55.27	55.99
CDY18561	Canola	cytosol	55.27	55.63
CDY69149	Canola	cytosol	54.62	55.34
CDX99296	Canola	cytosol	54.19	55.26
AT3G18950.1	Thale cress	cytosol, nucleus, plastid	56.13	55.18
Solyc12g088980.1.1	Tomato	cytosol	47.74	54.68
Solyc07g025140.2.1	Tomato	cytosol	51.83	54.52
CDX92289	Canola	cytosol	53.55	54.37
Bra022372.1-P	Field mustard	cytosol	53.12	53.93
AT1G49450.1	Thale cress	nucleus	54.41	53.72
Solyc04g079700.2.1	Tomato	cytosol	50.54	52.93
Solyc03g044830.2.1	Tomato	nucleus	51.18	52.08
CDY16499	Canola	nucleus	52.26	52.03
Bra014189.1-P	Field mustard	nucleus	52.26	52.03
CDX77246	Canola	nucleus	52.26	51.81
CDX69050	Canola	cytosol	52.47	51.59
Bra011525.1-P	Field mustard	cytosol	52.04	50.52
CDX75426	Canola	cytosol	52.04	50.52
Bra034622.1-P	Field mustard	cytosol	53.12	50.51
CDY46256	Canola	cytosol	53.12	50.51
CDX76276	Canola	cytosol	53.12	50.51
Solyc02g090150.1.1	Tomato	nucleus	48.82	50.22
AT4G34380.1	Thale cress	cytosol	53.33	50.1
Bra017646.1-P	Field mustard	cytosol	50.75	48.26
CDY45305	Canola	cytosol	50.75	48.26
CDX72479	Canola	cytosol	50.32	47.85
CDX84804	Canola	nucleus	26.02	46.54
Solyc05g006340.2.1	Tomato	cytosol	30.54	34.22
Solyc01g068250.2.1	Tomato	cytosol	30.54	34.13
Solyc04g005020.2.1	Tomato	plastid	31.4	34.03
Solyc05g013880.1.1	Tomato	cytosol, plastid	29.25	32.0
Solyc03g111780.1.1	Tomato	cytosol	26.67	30.92
Solyc12g044320.1.1	Tomato	cytosol, plastid	29.46	30.24
Solyc03g113850.1.1	Tomato	cytosol, plastid	30.32	29.75
KRH24543	Soybean	cytosol, nucleus	47.74	29.4

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4B3C6	PFAM:PF00400	PRINTS:PR00320
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:Solyc01g109120.2	EnsemblPlants:Solyc01g109120.2.1	UniParc:UPI00027687F8	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:96152983..96154941

Molecular Weight (calculated)

51355.2 Da

IEP (calculated)

9.050

GRAVY (calculated)

-0.472

Length

465 amino acids

Sequence
(BLAST)

001: MTRKNNSMGA MLLQKESFRR TKFGTLLYSD PISDHEESSN NSARSSNASS APSPPRTSSF NGTNTTANNS PNYFMSPWNQ SGSPYVKSPW IHQPLLDSSE
101: ESESSDFKNG LIGSLVREEG HIYSLAASGD LLYTGSDSKN IRVWKNLKEY SGFKCQSGLV KAIVVYGDKI FTGHQDGKIR VWKFLGKKRK AYKRVGSLPT
201: VRDYLKSSIN PKAYVEVRRN RNVPWIKHFD AVSCMSLDKE RGLLYSGSWD KTLKVWRLSD SKCIESINAH QDAINSVVVG FDGLVFTGSA DGTVKAWRRE
301: LVGNNAKHVL VETLLKQDNA VTSLAVNAAA ATVYAGSSDG LANFWERQKH FLEYGGALRG HKLAVLCVAV AGSLVLSGSA DKSICVWRRE EGGIHSCLTV
401: LTGHNGPVKC LTVEEDSNGS DNDSEDEAPV EKRSDKYWRV YSGSLDNSVK VWRLSENSFS GFEEI

Best Arabidopsis Sequence Match ( AT3G18950.1 )
(BLAST)

001: MVIATETTSS SHHRRLTFAS FLNSDPAADE EEQSHGVDDI INPSSSNKNI NKDVHHNYRQ SQSNASTTSG ESSPNQVLSP WNQTYSPYYT DTTNTPSMSP
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG

Arabidopsis Description

En/Spm-like transposon protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LJ71]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.