Factsheet for VIT_03s0063g01790.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34380.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT4G34380.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT4G34380.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT4G34380.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT4G34380.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT4G34380.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT4G34380.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g11600.t01	Wine grape	nucleus	67.64	66.01
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	62.02	59.23
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	61.35	58.71
VIT_07s0255g00110.t01	Wine grape	nucleus	62.7	56.02
AT4G34380.1	Thale cress	cytosol	60.0	53.94
CDX69050	Canola	cytosol	56.63	53.28
Bra011525.1-P	Field mustard	cytosol	57.08	53.03
CDY46256	Canola	cytosol	57.75	52.56
CDY45305	Canola	cytosol	57.53	52.35
Bra034622.1-P	Field mustard	cytosol	57.53	52.35
CDX75426	Canola	cytosol	56.18	52.19
CDX76276	Canola	cytosol	57.3	52.15
Bra017646.1-P	Field mustard	cytosol	57.08	51.94
CDX72479	Canola	cytosol	57.08	51.94
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	33.48	36.7
VIT_13s0019g01680.t01	Wine grape	plastid	31.91	35.77
VIT_01s0026g00880.t01	Wine grape	cytosol	33.48	34.89
VIT_17s0000g09730.t01	Wine grape	cytosol, plastid	31.24	34.75
VIT_04s0008g03540.t01	Wine grape	cytosol	33.26	33.04
VIT_01s0137g00360.t01	Wine grape	cytosol	31.69	32.64
KRH24543	Soybean	cytosol, nucleus	54.61	32.19
VIT_09s0002g04040.t01	Wine grape	nucleus	31.91	31.7
VIT_09s0002g04050.t01	Wine grape	cytosol	29.44	29.24
VIT_09s0002g04060.t01	Wine grape	nucleus	29.66	13.91

Protein Annotations

EntrezGene:100248616	wikigene:100248616	Gene3D:2.130.10.10	MapMan:35.1	ProteinID:CCB56939	ProteinID:CCB56939.1
UniProt:F6HQI2	EMBL:FN596006	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100248616	wikigene:LOC100248616	PFAM:PF00400
PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF145	SMART:SM00320
SUPFAM:SSF50978	TIGR:TC62499	UniParc:UPI0001982EA1	ArrayExpress:VIT_03s0063g01790	EnsemblPlantsGene:VIT_03s0063g01790	EnsemblPlants:VIT_03s0063g01790.t01
unigene:Vvi.19166	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002281238
RefSeq:XP_002281238.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:5124598..5126444

Molecular Weight (calculated)

49145.0 Da

IEP (calculated)

10.381

GRAVY (calculated)

-0.391

Length

445 amino acids

Sequence
(BLAST)

001: MRNERGGVVL AERNVLPRPK LSAILRSDPK NDEEEMNRRS NVSMDSSVPP SSGENSPLVM SPWNHPSSPF AKSPWTKSSS PMGLPQNGLI GSMVREEGHV
101: YSLAATGNLL YTGSDSKNIR VWKNLKAYSG FKSNSGLVKA IVISGEKIFT GHQDGKIRVW RVSPKNPKLH KRIGSLPTFK DFLKSSINPK NYVKVRRKRS
201: VLRIKHFDAV SCLSLDQDQG LLYSGSWDKT LKVWRISDSK CLESIRAHDD AINAVVAGFA GLVFTGSADG TVKVWHRQLH GKGTKHLFLQ TLLNQETAIT
301: SLAVNTEGAI IYCGSSDGLV NFWEREKHLK HGGVLRGHKH AVLCLATAGN LVFSGSADKS ICVWRREGGI HTCLSVLTGH TGPVKCLAVE EDQESTKRDQ
401: RWIVYSGSLD KSVKIWRVSE QAPDIQQMRL MAQNYVPSPL SSPAK

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.