Factsheet for VIT_04s0008g03540.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52729	Soybean	cytosol	75.22	73.74
KRH62060	Soybean	cytosol	66.74	72.05
VIT_09s0002g04040.t01	Wine grape	nucleus	61.61	61.61
VIT_09s0002g04050.t01	Wine grape	cytosol	60.04	60.04
GSMUA_Achr10P...	Banana	nucleus	58.71	55.96
Zm00001d009003_P001	Maize	cytosol	48.66	41.92
TraesCS3B01G182500.1	Wheat	cytosol	46.65	41.39
TraesCS3D01G163800.1	Wheat	cytosol	46.65	41.39
TraesCS3A01G156000.1	Wheat	cytosol	46.65	41.3
HORVU3Hr1G031720.2	Barley	cytosol	46.65	41.22
Zm00001d039292_P001	Maize	cytosol	47.99	40.26
EES02188	Sorghum	cytosol	47.77	39.78
Os01t0232200-00	Rice	cytosol	45.76	39.05
VIT_18s0001g11600.t01	Wine grape	nucleus	35.71	35.09
VIT_03s0063g01790.t01	Wine grape	cytosol	33.04	33.26
VIT_07s0255g00110.t01	Wine grape	nucleus	36.83	33.13
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	28.57	31.53
VIT_01s0026g00880.t01	Wine grape	cytosol	29.69	31.15
VIT_17s0000g09730.t01	Wine grape	cytosol, plastid	27.01	30.25
VIT_13s0019g01680.t01	Wine grape	plastid	24.55	27.71
VIT_01s0137g00360.t01	Wine grape	cytosol	26.56	27.55
VIT_09s0002g04060.t01	Wine grape	nucleus	35.04	16.54

Protein Annotations

EntrezGene:100266358	wikigene:100266358	Gene3D:2.130.10.10	MapMan:35.1	EMBL:AM430844	ProteinID:CAN66946
ProteinID:CAN66946.1	ProteinID:CBI20863	ProteinID:CBI20863.3	UniProt:D7SUB4	EMBL:FN595231	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100266358
wikigene:LOC100266358	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF213	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00015C884B	ArrayExpress:VIT_04s0008g03540	EnsemblPlantsGene:VIT_04s0008g03540
EnsemblPlants:VIT_04s0008g03540.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002281362	RefSeq:XP_002281362.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:2897021..2898455

Molecular Weight (calculated)

51070.1 Da

IEP (calculated)

8.724

GRAVY (calculated)

-0.372

Length

448 amino acids

Sequence
(BLAST)

001: MEFYGKRSLS SYMDEERKAI NQSPNRAPLR THQQISEQDL HLSPTRSRMT LMPPPSPESP WTLSPLHTPS PSLLYHCIAS LHRHEGNIYS IAVSRGLVFT
101: GSESSRVRVW RQPDCIERGY LKASSGEVRA ILGYGNMLFT THRDNKIRMW NVTNSDSFRS KKVSTLPRRS SLFIFPRASP QKHKDCISCM AYYHAEGLLY
201: TGSWDRTVKA WRVSDKQCVD SFVAHEDNVN AIVVNQEDGC LFTCSSDGSV KVWRRLYVES SHTLTMTLKF QPSPVNALAL SLSLNTCFLY SGSSDGFINF
301: WEKEKMSGRF NHGGFLQGHR FAVLCLVAVE KLVFSGSEDT TIRVWRREEG SCYHECLAVL DGHRGPVRCL AACLEMEKVV MGFLVYSASL DQTFKVWRIR
401: VLPDDQKKMC LDESNRSDSL KAKIMEYEMS PVLSPSWVEK KLQSSHFQ

Best Arabidopsis Sequence Match ( AT3G50390.1 )
(BLAST)

001: MSSMHKKGTS RDVNSQAFTK LTKVETIPDP DIYDITYVDI SPSEGSSSPL SKSPWSVQVD PSAVDSPYHS VKVTTDTTKE KSTNHSPNIL LGSLVREEGH
101: IYSLATSGDL LYTGSDSKNI RVWKNHVEFS SFKSNSGLVK AIVLAGDKIF TGHQDGKIRV WKAASKESNV HRRVGTMPNL LDYIRNSIVP SSYFNFTRRN
201: RSSAALGFRH LDAISCLALS EDKRLLYSGS WDKTFKVWRV SDLRCVESVN AHEDAVNAVV SGFDGLVFTG SADGTVKVWR REDQAKDTKH FFSETLLKQD
301: CAVTAIAVDQ SATLVYCGSS DGTVNFWERE NNMKNGGVLK GHKLAVLCLV AAGNLMFSGS ADLGIRVWRR PEGGGEHVCL SVLTGHAGPV KCLAVERDQE
401: SVSGERRWIV YSGSLDRSVK MWRVSESSPP MVNQEFKLPD QFGGGGGGGP AELTVAPSFS AQGRISPQK

Arabidopsis Description

At3g50390 [Source:UniProtKB/TrEMBL;Acc:A2RVN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.