Factsheet for Zm00001d009003_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039292_P001	Maize	cytosol	87.88	85.58
EES02188	Sorghum	cytosol	86.73	83.83
TraesCS3A01G156000.1	Wheat	cytosol	80.77	83.0
HORVU3Hr1G031720.2	Barley	cytosol	80.58	82.64
TraesCS3D01G163800.1	Wheat	cytosol	80.19	82.57
TraesCS3B01G182500.1	Wheat	cytosol	80.19	82.57
Os01t0232200-00	Rice	cytosol	76.73	76.0
VIT_04s0008g03540.t01	Wine grape	cytosol	41.92	48.66
GSMUA_Achr10P...	Banana	nucleus	43.46	48.09
KRH62060	Soybean	cytosol	36.54	45.78
KRH52729	Soybean	cytosol	39.81	45.3
PGSC0003DMT400024834	Potato	cytosol	40.0	43.79
VIT_09s0002g04040.t01	Wine grape	nucleus	37.5	43.53
VIT_09s0002g04050.t01	Wine grape	cytosol	35.38	41.07
Zm00001d041381_P001	Maize	cytosol, mitochondrion	29.23	32.2
Zm00001d033304_P001	Maize	mitochondrion, plastid	29.42	31.81
Zm00001d017994_P001	Maize	cytosol	20.96	30.62
Zm00001d042132_P001	Maize	plastid	20.77	26.87
Zm00001d025699_P001	Maize	plastid	21.35	24.56
Zm00001d003272_P001	Maize	cytosol, plastid	19.81	22.84

Protein Annotations

EntrezGene:103636845	Gene3D:2.130.10.10	MapMan:35.1	ProteinID:AQK91174.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K7VRF6
PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF213
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000220AEAD	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d009003	EnsemblPlants:Zm00001d009003_P001	EnsemblPlants:Zm00001d009003_T001	SEG:seg	:

Description

Transducin/WD40 repeat-like superfamily protein

Coordinates

chr8:-:29525751..29527313

Molecular Weight (calculated)

55246.5 Da

IEP (calculated)

7.726

GRAVY (calculated)

-0.171

Length

520 amino acids

Sequence
(BLAST)

001: MDFGRRKSFS FFEEDRKSSR PGAHTPVHQY HSRAGGGGRS PAREAAEPAR LSMSSAVPGL GLGVEVPLPP MQGGCSPWVQ SPLHGRLRFP PSPAAIYHCL
101: AALHRLEGDV HALAVARGVL FTASDSGRVR AWAAPGCFNR GYLDVGRGRV PALAACGSTL VTSHARDHHV RVWTVCAAVV CDHVRAKKAA TLPARSSLLL
201: HPFAKRRPHP HRDTVSCLVL HAVAGLLYTA SHDHTVKAWR LSDGSCVDSF VAHDGPVNAM AVNEADGCIF TGSADGTVKM WRRVYGGTAH ALIIVLRSSE
301: LSPVNALTLC HAAATPGSVA TRRCFLYAGS SDGYVNAWEK EATVGRPTHV GYLKGHRLAV LCLASGCGGR VVVSGSEDAT MRVWRREGIN SKGGGGSAAH
401: TCLAVIEGHR GPVRCLAVGG GEAGEVEGSM VVYSAGLDKS VKVWRVRVVG KEDDEEDDDG EDCGDDPEAA AEILMAGEIG KAFDDGETHV RDDVEEDEFV
501: APTPVLSPVW VEKRRHTSRG

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.