Factsheet for Zm00001d033304_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91330	Sorghum	mitochondrion	90.23	87.5
TraesCS4A01G242800.1	Wheat	plastid	66.11	68.24
TraesCS4B01G072300.1	Wheat	plastid	66.11	67.23
TraesCS4A01G242900.1	Wheat	plastid	67.36	66.8
TraesCS4D01G071100.1	Wheat	plastid	65.9	66.74
TraesCS4B01G072200.1	Wheat	plastid	66.32	66.46
TraesCS4D01G071000.1	Wheat	plastid	66.74	66.32
HORVU4Hr1G012000.11	Barley	plastid	66.11	66.25
TraesCS4B01G072100.1	Wheat	plastid	66.11	65.57
Zm00001d041381_P001	Maize	cytosol, mitochondrion	55.51	56.57
GSMUA_Achr7P08190_001	Banana	cytosol	35.55	51.82
GSMUA_Achr9P26470_001	Banana	nucleus	44.07	51.21
Os03t0625300-00	Rice	mitochondrion	55.09	50.48
GSMUA_Achr9P09670_001	Banana	plastid	37.01	48.37
GSMUA_Achr6P34640_001	Banana	plastid	35.97	44.02
GSMUA_Achr2P17180_001	Banana	golgi	41.79	42.86
Zm00001d017994_P001	Maize	cytosol	24.32	32.87
Zm00001d042132_P001	Maize	plastid	26.82	32.09
Zm00001d003272_P001	Maize	cytosol, plastid	28.48	30.38
Zm00001d009003_P001	Maize	cytosol	31.81	29.42
Zm00001d039292_P001	Maize	cytosol	32.22	29.03
Zm00001d025699_P001	Maize	plastid	27.23	28.98

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1D6KXL6	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM07193.1	PFAM:PF00400
PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF270	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000221C8AA	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
EnsemblPlantsGene:Zm00001d033304	EnsemblPlants:Zm00001d033304_P001	EnsemblPlants:Zm00001d033304_T001	SEG:seg	:	:

Description

Nucleotide binding protein

Coordinates

chr1:-:258182011..258184115

Molecular Weight (calculated)

50929.8 Da

IEP (calculated)

8.075

GRAVY (calculated)

-0.187

Length

481 amino acids

Sequence
(BLAST)

001: MGNRKKLVHF LRVDPAAAAA ASALSSPTSF SSFSDDDGYS SSSFSSSSPS RYSPPKSPWA RLPGLGGADD AAATGLIASL VKEDGKVYSL AAAGDVLYTG
101: TDSENVRVWR DRRELAGFRT GSGLVKAIVV AADGRIFTGH QDGKVRVWRA DAADPAVHRR VGSLPPLGDL LVSSVNPSSY VRSPRGGRGR GRRRVAVWLR
201: HSDAVSSLSL DEGAGLLYSA SWDRTFKAWR VSDYRCLESV PAHDDAVNTV AAAGFGGLVL TGSADGTVKV WRRREAAADR TSHVLQRVLR EGDGAVTAIA
301: ACPEARAVYV GSSDGLVTCW RWGLDVDAQP THAGVLAGHG MGVLCLAVSG RVVVSGSADG TLCVWRRDDD DDEQKGHARL AVLVGHTGPV KCVAVAADED
401: CYDADGERRF VVYSGSLDGS VKVWRLSEER ALEPPAVETT TPPLMAAALR QSETWMPRPR TAQLPSPVQT WAPELKGVAA A

Best Arabidopsis Sequence Match ( AT4G34380.1 )
(BLAST)

001: MRNETGGTMV VDLQTDPYNN IHSRHNLSYD LSEGPKPRPK FGNISKTDHD EIFPPDDPII INSNVTHQRF SSVSASTMSS GPASGEGSPC VMSPWARVSP
101: PWGADFNEDN VLETNGLIGS IVRKEGHIYS LAASGDLLYT GSDSKNIRVW KNLKEHAGFK SSSGLIKAIV IFGDRIFTGH QDGKIRIWKV SKRKPGKHKR
201: VGTLPTFKSM VKSSVNPKHF MEVRRNRNSV KTKHNDAVSS LSLDVELGLL YSSSWDTTIK VWRIADSKCL ESIHAHDDAI NSVMSGFDDL VFTGSADGTV
301: KVWKRELQGK GTKHTLAQVL LKQENAVTAL AVKSQSSIVY CGSSDGLVNY WERSKRSFTG GILKGHKSAV LCLGIAGNLL LSGSADKNIC VWRRDPSDKS
401: HQCLSVLTGH MGPVKCLAVE EERACHQGAK ASVAEGDRKW IIYSGSLDKS VKVWRVSERM ATWKEMDEPA ASSERKSSSS PHEGSGAWSS RNVEK

Arabidopsis Description

At4g34380 [Source:UniProtKB/TrEMBL;Acc:Q9SZ03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.