Factsheet for GSMUA_Achr6P34640_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P09670_001	Banana	plastid	70.99	75.82
GSMUA_Achr9P26470_001	Banana	nucleus	63.87	60.63
GSMUA_Achr7P08190_001	Banana	cytosol	39.19	46.67
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	41.73	43.97
GSMUA_Achr3P30740_001	Banana	cytosol	35.88	40.29
TraesCS5D01G074900.1	Wheat	cytosol	46.06	40.22
TraesCS5B01G068600.1	Wheat	cytosol	45.8	40.0
TraesCS5A01G063900.1	Wheat	cytosol	45.8	39.91
GSMUA_Achr6P20880_001	Banana	cytosol	39.69	39.8
TraesCS4A01G242800.1	Wheat	plastid	45.55	38.41
GSMUA_AchrUn_...	Banana	nucleus	38.68	38.19
TraesCS4B01G072200.1	Wheat	plastid	46.31	37.92
TraesCS4A01G242900.1	Wheat	plastid	46.56	37.73
TraesCS4B01G072300.1	Wheat	plastid	45.29	37.63
TraesCS4D01G071100.1	Wheat	plastid	45.04	37.26
GSMUA_Achr2P17180_001	Banana	golgi	44.27	37.1
TraesCS4D01G071000.1	Wheat	plastid	45.55	36.98
TraesCS4B01G072100.1	Wheat	plastid	45.04	36.49
HORVU4Hr1G012000.11	Barley	plastid	44.27	36.25
Zm00001d041381_P001	Maize	cytosol, mitochondrion	43.51	36.23
Zm00001d033304_P001	Maize	mitochondrion, plastid	44.02	35.97
OQU91330	Sorghum	mitochondrion	45.04	35.69
OQU79483	Sorghum	cytosol, mitochondrion, nucleus	44.02	34.12
Os12t0594000-00	Rice	cytosol, peroxisome, plastid	46.31	30.38
Os03t0625300-00	Rice	mitochondrion	40.46	30.29
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	38.17	30.12
GSMUA_Achr11P...	Banana	cytosol	27.23	28.76
HORVU5Hr1G017260.1	Barley	plastid	37.91	28.11
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	41.22	25.31
GSMUA_Achr6P36100_001	Banana	cytosol	24.94	24.94
GSMUA_Achr9P07610_001	Banana	nucleus	24.94	24.08
GSMUA_Achr3P17140_001	Banana	cytosol	25.19	22.3
GSMUA_Achr7P19910_001	Banana	cytosol	24.94	22.27
GSMUA_Achr10P...	Banana	nucleus	25.45	21.28
GSMUA_Achr8P28630_001	Banana	cytosol	23.92	18.29

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr6G34640_001	EnsemblPlants:GSMUA_Achr6P34640_001	EnsemblPlants:GSMUA_Achr6T34640_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0TCQ7	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002956D97	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

Putative F-box/WD repeat-containing protein pof1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G34640_001]

Coordinates

chr6:-:33152747..33154407

Molecular Weight (calculated)

41657.2 Da

IEP (calculated)

10.039

GRAVY (calculated)

-0.331

Length

393 amino acids

Sequence
(BLAST)

001: MMNRKGGTGS PQRSSKLPGY SSDRNPTSTG ASPYNLSPWS PGAVSPFAKS PWAYLPLLSE EALADPAATG LVGSLGRREM SGFKSSSGLV KAIIVAGDRI
101: FTGHQDGKIR IWKTSSTNPA VPKRVGTLPR LKDFLKSSIN PSNYAGILYS GSWDKTVKVW RVSDSKCLES ITAHDDAVNA VATGFGGFLF TGSADGTVKV
201: WRREETGKGG PTRHVLVQTL LRHEAAVTSV AVAEAAGAVG SADMTLCVWR REEAGGYGAH AKLAVFAGHE GPVKCLAVKA EDNHADGACG GPRYVVYSGS
301: LDNSVKVWRV SEWDTARGKT PEQGPAEAEP SSLRSRGGGA GAPVAQRQSY GAVRNPTVGH DVKGGPPPQS IKNKCYFLYL TVCVFSQTKV YWR

Best Arabidopsis Sequence Match ( AT1G49450.1 )
(BLAST)

001: MAIEENRSHN DYLRRMTFAA FLKSGSLAAE EETYHSDGDH HNQSTFSSNS DSQRPSNASS ASSDSSSPIY PLSPWNQTYY PSNDNTTSFS SVTQSPWNQT
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S

Arabidopsis Description

F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.