Factsheet for Zm00001d041381_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G074900.1	Wheat	cytosol	67.16	70.44
TraesCS5B01G068600.1	Wheat	cytosol	66.95	70.22
TraesCS5A01G063900.1	Wheat	cytosol	66.95	70.07
OQU79483	Sorghum	cytosol, mitochondrion, nucleus	72.46	67.46
Zm00001d033304_P001	Maize	mitochondrion, plastid	56.57	55.51
GSMUA_Achr7P08190_001	Banana	cytosol	37.29	53.33
Os12t0594000-00	Rice	cytosol, peroxisome, plastid	67.58	53.26
GSMUA_Achr9P26470_001	Banana	nucleus	41.74	47.58
GSMUA_Achr9P09670_001	Banana	plastid	36.23	46.47
HORVU5Hr1G017260.1	Barley	plastid	50.64	45.09
GSMUA_Achr6P34640_001	Banana	plastid	36.23	43.51
GSMUA_Achr2P17180_001	Banana	golgi	43.22	43.5
Zm00001d017994_P001	Maize	cytosol	26.69	35.39
Zm00001d042132_P001	Maize	plastid	28.39	33.33
Zm00001d009003_P001	Maize	cytosol	32.2	29.23
Zm00001d003272_P001	Maize	cytosol, plastid	27.33	28.6
Zm00001d039292_P001	Maize	cytosol	31.57	27.9
Zm00001d025699_P001	Maize	plastid	26.06	27.21

Protein Annotations

EntrezGene:103650457	Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1D6MVQ0	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM32882.1
PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF323
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000221056F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d041381	EnsemblPlants:Zm00001d041381_P001	EnsemblPlants:Zm00001d041381_T001	SEG:seg	:

Description

Transducin/WD40 repeat-like superfamily protein

Coordinates

chr3:-:115132711..115134129

Molecular Weight (calculated)

49920.5 Da

IEP (calculated)

8.052

GRAVY (calculated)

-0.322

Length

472 amino acids

Sequence
(BLAST)

001: MGNHKKLLQF LRPDPAVAAA PARSSTTSDD EDDGTSGSTP VTPTTSASAA ASPYASSPWT HLPGLGPGPA AEATELLGSL VKEDGGHVYS LAAAGDLLYT
101: GTDSRTVRVW RERDRRELGG FRSGSGLVKA IVVGGDGRVY TGHQDGKVRV WRAPQSADEV VEDPSALRRV GTLPRLRDVL RSSLLRPSQP MLRHSDAVSA
201: LSLDAAAGLI YSASWDRTFK VWRVSDFRCL ESVVRAHGDA VNAVAAAGFD ALVLTGSADG TVKAWRRRAA EGKGRATRHV MERVLREGDG AVTAIAVCAQ
301: ARVAYAGSSD GAVAHWQWPR GAAPRSGAAP RSGAALRGHK MAVLCLAVAG RVVVSGSADR TISVWRRGEG ASHALLAVLT GHTGPVKCVA MDQKEEEEEE
401: EEEEDDEGAA PRRWVVYSGS LDGSVKVWRV SESDGGGGFA PDLTMSTPAL HWKGFSPSPP PRAHRVQPRI EE

Best Arabidopsis Sequence Match ( AT4G34380.1 )
(BLAST)

001: MRNETGGTMV VDLQTDPYNN IHSRHNLSYD LSEGPKPRPK FGNISKTDHD EIFPPDDPII INSNVTHQRF SSVSASTMSS GPASGEGSPC VMSPWARVSP
101: PWGADFNEDN VLETNGLIGS IVRKEGHIYS LAASGDLLYT GSDSKNIRVW KNLKEHAGFK SSSGLIKAIV IFGDRIFTGH QDGKIRIWKV SKRKPGKHKR
201: VGTLPTFKSM VKSSVNPKHF MEVRRNRNSV KTKHNDAVSS LSLDVELGLL YSSSWDTTIK VWRIADSKCL ESIHAHDDAI NSVMSGFDDL VFTGSADGTV
301: KVWKRELQGK GTKHTLAQVL LKQENAVTAL AVKSQSSIVY CGSSDGLVNY WERSKRSFTG GILKGHKSAV LCLGIAGNLL LSGSADKNIC VWRRDPSDKS
401: HQCLSVLTGH MGPVKCLAVE EERACHQGAK ASVAEGDRKW IIYSGSLDKS VKVWRVSERM ATWKEMDEPA ASSERKSSSS PHEGSGAWSS RNVEK

Arabidopsis Description

At4g34380 [Source:UniProtKB/TrEMBL;Acc:Q9SZ03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.