Factsheet for TraesCS5B01G068600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G063900.1	Wheat	cytosol	98.67	98.45
TraesCS5D01G074900.1	Wheat	cytosol	98.0	98.0
Zm00001d041381_P001	Maize	cytosol, mitochondrion	70.22	66.95
OQU79483	Sorghum	cytosol, mitochondrion, nucleus	73.33	65.09
TraesCS4B01G072300.1	Wheat	plastid	67.33	64.06
TraesCS4B01G072200.1	Wheat	plastid	67.11	62.92
Os12t0594000-00	Rice	cytosol, peroxisome, plastid	83.56	62.77
HORVU5Hr1G017260.1	Barley	plastid	72.22	61.32
TraesCS4B01G072100.1	Wheat	plastid	65.11	60.41
GSMUA_Achr7P08190_001	Banana	cytosol	41.11	56.06
GSMUA_Achr9P26470_001	Banana	nucleus	48.22	52.42
GSMUA_Achr9P09670_001	Banana	plastid	40.0	48.91
GSMUA_Achr2P17180_001	Banana	golgi	49.11	47.12
TraesCS5B01G382700.1	Wheat	cytosol	49.11	46.53
GSMUA_Achr6P34640_001	Banana	plastid	40.0	45.8
TraesCS3B01G532800.1	Wheat	cytosol, plastid	32.44	33.8
TraesCS7B01G100800.1	Wheat	cytosol	28.89	33.68
TraesCS2B01G358100.1	Wheat	plastid	28.22	28.41
TraesCS3B01G182500.1	Wheat	cytosol	31.78	28.32

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF323	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS5B01G068600
EnsemblPlants:TraesCS5B01G068600.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:78219881..78221233

Molecular Weight (calculated)

48149.6 Da

IEP (calculated)

9.886

GRAVY (calculated)

-0.302

Length

450 amino acids

Sequence
(BLAST)

001: MRNHKKLLQF LRPDPAVAAA NDDGCSPLPS PTTSGSASTS ATASPSPYVA SPWVNLPGLG AGAALTAGAA DETGLLGSFV KEDGHVYSLA AAGDLLYTGT
101: DSKNVRVWRD RREFAGFQCG SGLVKAIVVA GDGRIYTGHQ DGKIRVWRAS ADDPAVHKRV GSLPKLGDFL RSSVRPSHYI ETRRRHSSVW LRHFDAVSCL
201: SLDADAGLLY SGSWDRTFKV WRVSDSRCLE SVRAHDDAVN TVAAAGFDAL AFTGSADGTV KVWRREDGKG GATRHVMERV LRKGESAVTA IAVAAEARVV
301: YVASSDGAVT HWQWRRGADR ESAPRNGGAL RGHKMAVLSL AVAGRVVVSG SADRTIAVWR RDEGADHSRL AVLSGHTGPV KCVAMDEEEP VDADGHRRWV
401: VYSGSLDGSV KVWRVSDAPG AMTTRTPAHV WKGTPSPLGA WTPYRAPERR

Best Arabidopsis Sequence Match ( AT3G18950.1 )
(BLAST)

001: MVIATETTSS SHHRRLTFAS FLNSDPAADE EEQSHGVDDI INPSSSNKNI NKDVHHNYRQ SQSNASTTSG ESSPNQVLSP WNQTYSPYYT DTTNTPSMSP
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG

Arabidopsis Description

En/Spm-like transposon protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LJ71]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.